G159028


Basic Information

Item Value
gene id G159028
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 17596059 ~ 17599354 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU215567
ctcactctctcactctttctctgtgtctctctctcgcacgtgaacgcctccgcgtttgacctgcagcactgtgtttagctgttcttaaaaatcattttaattaaataatagttctatgcttctatgttacagtgttatttaacataattctgatcatatttcgctcatttagcagacaagcaccctgatctctacaaagagctgtgaagtcgacaggttagtggagttagtcaagatacactctgtagctttactaagatttactagcgactgctagtaaatcacgttaacacggagaggagtgtgcaggagttttgttttggacccgtggttttctctatttctccattatcccattggctgtgaaacatgaactcaagatgttcacgttttcgcgtttccatcgcaaatctgtggacaggcacgtagcctgcttgctcgttacactgaacatgggcttattaaaaacggtaaacggttgattaatataacggagcagtgagtgttaaaatgaacataaatggtaatgttcttctgtctctttattttccttattcagaacttaacttctgcccgcccgtcaggttcacatagtcaggctaccattacctctggttttagttttagtttttaggaagtgtttagataattatgttatagttaaggttataataacgaaacttgttttttgtacaaatgtttcattttagaataaaaaagtttgcaccgattgttcagtgttcaatccagttcagtcaaaaataaacattttatgttcagatatttttattgtttttttttcttccaagtatcgttttggtatcgagaatcgtgatactacagttggtatcggtatcgaagtcaaaattttggtatcgtgacaaccctac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU215567 True 890 lncRNA 0.37 2 17596059 17599354

Neighbor

gene id symbol gene type direction distance location
LOC103029280 skor1 coding upstream 24142 17563875 ~ 17571917 (+)
c18h15orf61 cunh15orf61,c4h15orf61,LOC103025902,LOC107738714,LOC107583911,LOC107718314,LOC107686305,LOC107596966 coding upstream 97288 17493793 ~ 17498771 (+)
iqch NA coding upstream 103128 17458015 ~ 17492931 (+)
LOC103027004 smad3,LOC108424035,LOC105892538,LOC103353199,LOC107740443 coding upstream 148266 17425218 ~ 17447793 (+)
LOC107197433 NA coding upstream 294377 17295207 ~ 17301682 (+)
morf4l1 morf4l1,LOC107596963,LOC107686360,LOC107738770,LOC107708218,LOC107672187 coding downstream 11523 17610877 ~ 17622128 (+)
LOC103024336 NA coding downstream 25700 17625054 ~ 17645249 (+)
LOC103039437 tle3a,LOC108424090,LOC107596960,LOC107672253,LOC108264729 coding downstream 164337 17763691 ~ 17797748 (+)
ddb2 ddb2 coding downstream 349776 17949130 ~ 17958434 (+)
kbtbd4 kbtbd4,LOC107708223,LOC107738697,LOC107596956,LOC107672308 coding downstream 365029 17964383 ~ 17968936 (+)
G159017 aagab non-coding upstream 139082 17455315 ~ 17456977 (+)
G159014 NA non-coding upstream 144727 17448832 ~ 17451332 (+)
G158991 NA non-coding upstream 312177 17283467 ~ 17283882 (+)
G158882 rpl4 non-coding upstream 418867 17173067 ~ 17177192 (+)
G158891 NA non-coding upstream 437608 17157142 ~ 17158451 (+)
G159115 NA non-coding downstream 270653 17870007 ~ 17870468 (+)
G159120 kif23,LOC107686310 non-coding downstream 327634 17926988 ~ 17938088 (+)
G159122 NA non-coding downstream 342962 17942316 ~ 17946683 (+)
G159129 NA non-coding downstream 396344 17995698 ~ 17996728 (+)
G159182 NA non-coding downstream 508809 18108163 ~ 18109539 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other upstream 223853 17327100 ~ 17372206 (+)
zwilch zwilch other upstream 406808 17177675 ~ 17189251 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other upstream 423831 17101612 ~ 17172228 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other upstream 797659 16779506 ~ 16798400 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other upstream 870850 16654136 ~ 16725209 (+)
rapsn rapsn other downstream 371742 17971096 ~ 17985904 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other downstream 926174 18525528 ~ 18576437 (+)
G159666 NA other downstream 2586162 20185516 ~ 20186919 (+)
G159728 NA other downstream 3137244 20736598 ~ 20737049 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other downstream 3409948 21009302 ~ 21011794 (+)

Expression


Co-expression Network