G159115


Basic Information

Item Value
gene id G159115
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 17870007 ~ 17870468 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU215675
acactctaaaaaacagaggtacgatatgagtacttttttgtactcgaaggtacactctttataattgtaccctcaaaggtacaatattggtctttacagggtcagatttgttccctctgaagtacaaagtcatttctaacagcaataagtacaaatttgtaccatttaaccagccaaagggtacattcagtattctgcatcactgtactaatgaacaatatatatttaaattgcacattttttatttgaaagccagacaattttggatcatcaagtttttgagccatatttagttgatgataacgtttataatctttatgatctttactgccacaaaaaccatgggtacaaaaaaggactttcactgaaaggtacttttttgtgcctcaatataaggtacagccccagcgacaagctttgtactcttttaagtacaaatctgtacttatatttcttagagtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU215675 True 462 lncRNA 0.33 1 17870007 17870468

Neighbor

gene id symbol gene type direction distance location
LOC103039437 tle3a,LOC108424090,LOC107596960,LOC107672253,LOC108264729 coding upstream 72259 17763691 ~ 17797748 (+)
LOC103024336 NA coding upstream 224758 17625054 ~ 17645249 (+)
morf4l1 morf4l1,LOC107596963,LOC107686360,LOC107738770,LOC107708218,LOC107672187 coding upstream 247879 17610877 ~ 17622128 (+)
LOC103025173 pias1b,LOC108424062,LOC108264782,LOC107596961,LOC107738708 coding upstream 265458 17577392 ~ 17604549 (+)
LOC103029280 skor1 coding upstream 298090 17563875 ~ 17571917 (+)
ddb2 ddb2 coding downstream 78662 17949130 ~ 17958434 (+)
kbtbd4 kbtbd4,LOC107708223,LOC107738697,LOC107596956,LOC107672308 coding downstream 93915 17964383 ~ 17968936 (+)
LOC103029004 NA coding downstream 115525 17985993 ~ 17994370 (+)
agk agk coding downstream 133539 18004007 ~ 18010554 (+)
wee2 wee2 coding downstream 153436 18023904 ~ 18030005 (+)
G159028 NA non-coding upstream 270653 17596059 ~ 17599354 (+)
G159017 aagab non-coding upstream 413030 17455315 ~ 17456977 (+)
G159014 NA non-coding upstream 418675 17448832 ~ 17451332 (+)
G158991 NA non-coding upstream 586125 17283467 ~ 17283882 (+)
G158882 rpl4 non-coding upstream 692815 17173067 ~ 17177192 (+)
G159120 kif23,LOC107686310 non-coding downstream 56520 17926988 ~ 17938088 (+)
G159122 NA non-coding downstream 71848 17942316 ~ 17946683 (+)
G159129 NA non-coding downstream 125230 17995698 ~ 17996728 (+)
G159182 NA non-coding downstream 237695 18108163 ~ 18109539 (+)
G159184 asz1 non-coding downstream 243537 18114005 ~ 18128429 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other upstream 497801 17327100 ~ 17372206 (+)
zwilch zwilch other upstream 680756 17177675 ~ 17189251 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other upstream 697779 17101612 ~ 17172228 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other upstream 1071607 16779506 ~ 16798400 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other upstream 1144798 16654136 ~ 16725209 (+)
rapsn rapsn other downstream 100628 17971096 ~ 17985904 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other downstream 655060 18525528 ~ 18576437 (+)
G159666 NA other downstream 2315048 20185516 ~ 20186919 (+)
G159728 NA other downstream 2866130 20736598 ~ 20737049 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other downstream 3138834 21009302 ~ 21011794 (+)

Expression


Co-expression Network