G159122


Basic Information

Item Value
gene id G159122
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 17942316 ~ 17946683 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU215688
TAGAAGCTGAGCGCTCCATAGTCAAAGAAAAAGCAGATATGCCTGGCACGCTCAGACATGGTGCTGAACGTGTGGGCACAGCTGGAGGCCAGTGGGTACAAACAGCAGGACACCAGGAAGACCAGTAGAGGCCAGCAGTATGTGTCTTCCTGCCACTCCTCCTCTACTAGCACCATTAGCAGCTTCCATAGGAAAAACCTAGCACAAGTCAAATGATGGAGAGTTACTTCTTacatagtaaaaaaagaaactaagaACATGTAAGAAGATCCTATATAGGCCTATCATGATAATCACATTATTAACtcatcgtacaatatatggagaggACCTTAATCATTTTTGTGGCCTTAATATCACCAATTGTGTTTGCATAGTGTCTAAGAAAACAAGGTGCTGTAGTCATACCATGTGGGCAGAAAGTGGGTCCAAATGTTAAGGGTTTCATTAGTAAGCTGGAAGAGACTAAGAACACAGTCTTGAGCTGAGCTGTAGGGGTATCGATACCCTGAAATGATCCCATCTTCATGAAAGACTTTCGGCACTTGGTTGATGGTTAAGACTTGAGGCAGTTTGATGAGACTCAGCATGATAAAAGGTAGCAGCCGTCAAGACAAACCCTGGAAGCAGAGAGAACCTGCCATCTACTGATCTGCACTGTCCTTTttacttttcttctctttttaccTGGATCTTTCGACGTGCTCCCCACGTCCCTCTGAGCAGACACACAGTCTAGATGCTGGTGAAAGTGAAGTGTGTCCAGTGAGTAAGTGTTAAATAGTGACGGCTCCTCCAGTGCCTTGACCAGGCGATGCATGGGAAGCGAGCAGCTTTAGAGGGAAAAACATGCCTTTCTTTGTTTTCGTTGTCAGCTGCGCGTCCCAGGGCGAAATCTGATTGGTCGACGTGCTCATGTTTGCACCGCCG

Function

NR:

description
sorting nexin-1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU215688 True 930 lncRNA 0.46 3 17942316 17946683

Neighbor

gene id symbol gene type direction distance location
LOC103039437 tle3a,LOC108424090,LOC107596960,LOC107672253,LOC108264729 coding upstream 144568 17763691 ~ 17797748 (+)
LOC103024336 NA coding upstream 297067 17625054 ~ 17645249 (+)
morf4l1 morf4l1,LOC107596963,LOC107686360,LOC107738770,LOC107708218,LOC107672187 coding upstream 320188 17610877 ~ 17622128 (+)
LOC103025173 pias1b,LOC108424062,LOC108264782,LOC107596961,LOC107738708 coding upstream 337767 17577392 ~ 17604549 (+)
LOC103029280 skor1 coding upstream 370399 17563875 ~ 17571917 (+)
ddb2 ddb2 coding downstream 2447 17949130 ~ 17958434 (+)
kbtbd4 kbtbd4,LOC107708223,LOC107738697,LOC107596956,LOC107672308 coding downstream 17700 17964383 ~ 17968936 (+)
LOC103029004 NA coding downstream 39310 17985993 ~ 17994370 (+)
agk agk coding downstream 57324 18004007 ~ 18010554 (+)
wee2 wee2 coding downstream 77221 18023904 ~ 18030005 (+)
G159120 kif23,LOC107686310 non-coding upstream 4228 17926988 ~ 17938088 (+)
G159115 NA non-coding upstream 71848 17870007 ~ 17870468 (+)
G159028 NA non-coding upstream 342962 17596059 ~ 17599354 (+)
G159017 aagab non-coding upstream 485339 17455315 ~ 17456977 (+)
G159014 NA non-coding upstream 490984 17448832 ~ 17451332 (+)
G159129 NA non-coding downstream 49015 17995698 ~ 17996728 (+)
G159182 NA non-coding downstream 161480 18108163 ~ 18109539 (+)
G159184 asz1 non-coding downstream 167322 18114005 ~ 18128429 (+)
G159272 NA non-coding downstream 464629 18411312 ~ 18411936 (+)
LOC111194744 NA non-coding downstream 466678 18413361 ~ 18413950 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other upstream 570110 17327100 ~ 17372206 (+)
zwilch zwilch other upstream 753065 17177675 ~ 17189251 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other upstream 770088 17101612 ~ 17172228 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other upstream 1143916 16779506 ~ 16798400 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other upstream 1217107 16654136 ~ 16725209 (+)
rapsn rapsn other downstream 24413 17971096 ~ 17985904 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other downstream 578845 18525528 ~ 18576437 (+)
G159666 NA other downstream 2238833 20185516 ~ 20186919 (+)
G159728 NA other downstream 2789915 20736598 ~ 20737049 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other downstream 3062619 21009302 ~ 21011794 (+)

Expression


Co-expression Network