rapsn (rapsn)


Basic Information

Item Value
gene id rapsn
gene name rapsn
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 17971096 ~ 17985904 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU215692
GGCAATGAGTCAAAGATGTGCATACACATATCATCTTGCAGCTTCAGTCGATACTGCCTATGAGATCATGATTTCATGGATTTTGATTCAGGCTAACTTTCTATAACAAGACATTGTGTTGTTTGTTAAACTGCAACAACCTTGCAGGATTTCATTTCTTGTAATTAATTTTTATGTGGCAACGGTGTGCCATGAACAGACTTCTAAATCCTACCTATTTAAACACTATCACTTGAGAGAATACTAGTGTATATATACTTTGTAATACAAAAAAGGCTGCTTGTGAAACATATCAGTAAGTAGACAGTTTGATGGGACTTTTGTTGTTATAAAGGCAGCAAAGGCAGTTATCTCTGCTTGTTTGTCTTTATTTGAGAGATACCAAGATCTAGCAGCTGTTGTTTCAGTTTATTGGTCTACTGTTTAGATCAGGTATGTACTGTCAGATCCCAAATTATGTAATCTGAGTTATAGTTGTTCTATACATATATTTagttagatttattttttataaaatcgaCAGGCTAGCACAGGTCAAATGTTTCCACTACTTCCACTGCTtttcgggaaaaaaaaaacttgagataagaaatgttaaaatgcaatttttttcctcttgtactatttttatgttGTAATTTTGTAACATTGTGGTATCTGACATTTTAGAAATGCTTTGAAAATAACCCAAAAaattgtctttttctttctcttttttgtggctattttcattttaaatcatcCTTTGCTTCGTAACAGTGCCAGAAGGTTTCATGACAGGTGTCAGATGACAGTGCAAGACAGTGCTGCTGTGGTTAATTCAACTTATTCAAAAATTCAAGAAAAAAACTCTCTTTTGTACCCTGCATTCTCCAGCAACCCAGTTTCATTTAgtggtttattgtttgtaatGCTGGGTTGTAGATCATACGATTGTAGGTTCAATAGTCACATCAATTAAGCAGCAGTTGTTGAGCTCTTGTACAAGCCCTTTAACTCTTTCTGATCCAGGGGTGCCACAGCATGACTGACCTATGCATATTGACACTAATTTAACTAACCTAAAGGTGAGCAAGTAACCATACAGAACACAAGCAATGAGACTGAGAACCACTGATCTACTGCATGACTGCTCTGCTATTAGCTGCTCTTATTTAGTGTTCCATACAAAGGAATAAAGCACAACATTGCATGCATGTTCACAAAATACATCAACCTATTTGAGAGAATAGAAGGGTTAGTCTAATGTGGGACATTTTTGCATCAGGGTGCTTCCAGTTTTAAATATTGCTCCACCAAGTAAAATCTTCTAACAGATAAGGCACATCAGAGGGAGGAGGATTTTGCTGTATGGTATGCAGCGATTTcccataacattaataccacctccttgtttctacacattGCCTATTTTGTCAACGCCACCACAGGCTATATAGTCCACCTGTTGCACTGCATGCTCTTTTAGTAGTAtcctttcatcctgttcttcaaaggtcaggaccccacagagcAGGTACTATTTGTGTGGTGagtcattctcagcactacTGTGACACTGGCATGGTAGTAGTCTGTCAgcgtgttgtgctggtacaagtgaCAGAAACTCGTCTGTTTTTGAACGGTGTGTtagtcatcctctagtccttaaTCAGTGGTCAATGATTTCTTATAACTATACGGGAGCAATGTGAGATAATGCTGCTCTTCTCTGTGTGTATCTTTTCTTACGTGACTGTGTTAATTAAACCTTTCGTTCAAACAGACGTTTGTCCAACTTTACTAACATATTGCATGTTGCCCAATGTAGCTATCTCACATTCTGGCAACTCAAAGTCCATAACTACCTCTCTTTACATTTGTTCTTTACAATATTAGCATGTTTGTGCTTCAGAATCATATTGAAGCTCTGATAATGTACCTAAACATAGACTGAAATGTTTGAGAATTGTCCTAAAGGCGAATCATGTTGGG
>XM_007255981.3
atgtGTTTCTTGTGTTGTTAATTATGTATGTTGTGTTGTTAATATCAAAGATGTAATATGTAGACAGTAAATCtatcagtgttaaatcaacgcttattgttaaatcaacacttattgTTGAAACAACACTGagagtgttaatttaacatttaaaagtgtTCATTTAACACTGGTCAATTTACTATTCATTTAGCTCAGATTTTTCTTAATCTGCCCACAGTCTGCCCACAGTCTACAGTTTATATGCTAGATAGGAACAGTGTACTGATCTTGAAAAATTTTAACTGTGGTGTTATGACAAGATGTGAGTTAAAACCTCCAGATTTATCCTGGGAAAGGAACCCTATCTTGTGAATGGATAGGTGATAAAAGTACCTATATGTATCTTTGAGGCTGGTGAAAAGGGACAAAGAAGGGGAGGGGGGGTAAAAAGCTAGGTTTAGCTTAGAACTTGCCGATTCGATCCCATTGATGTGTTTCAAGAAGCAGTGATACTGTAACTCAAGACAAATACCATGTCCGACTTTGTGAACTATTCTAAGCATCAGTTGCTGACACCAAAGCCGGGAGCTGAGGGGGGCGGCACATATGTGCCTTAACTAGGCCCACCCACAGGAATTGCTAGCCAGTGTAAGGAGTATTTGACTTGCTCTCTTTCAATGTTGTGAAATAACTATCTGTTTTTAGCCCCCTCACTTGCAGAGCTCAGGTTCTTGTGAAAGGGAACTCTGGGAAGTCTTGCTTTAGGGTGTTCTTGTGTACTGCTGGAAGTTGTAGCTTCACGTTTGAGTAAAGCGTGCAGGGTGGAAGGTGAGAGGTAGAATTCGAGGTGGGAGGAGAGGCGGCCAGGCGTCTTTTGTGACCTTGGGTCTTTTCAGAGACTGAAGCTGGATTCCAGCAGGGACACATGGTCCAGACTGACAAGACCATCTGCTACAGCGCCAGCcctggagagagagggagggagggagagaagagGTGAAGGAAGGGAGGGGGGTAAAGCGGACACAGAATTCCTCCCACTGGGGTGTGGAGGCAGTAGATATTCTGGGAGATCTTTGCCAGCACCTTGGATTGGGACTTACTCCGTTGGCGTCTTTGAATATTGCTTAAATCTCTGAAGGCTTCTTTGTGGCTTTTTGAGAGGATCCAGGACTGGTGTTCAATCTAAGGAGCACAGATGACTTTCTTGTGGTTCCCTCAAGTCTACCAACGGGGATGAGCAACGGGGATCTTGGCTCTGGGGCTCTTGTATGCAGTGGATCCAGTTTCTCCCTCATCTCTCTGCACCCCAAAGCTGAAAGCGGTGGATTAAAGAGGCTGGTGGGTGCAGAGATTTGGTGTGGCCCATCCTTCTTTCATCTGTTCCTCCATTGTCTAAACAGTGCAAGGAAAGGGATTGTATGCTTGGGCTTCCTCTGAAGGCCGCAGGGTCAGGTGGATGAATATTTTTATGAGGCACTTTGTCGTAGAGATGGGCCAGGACCAAACGAAGCAGCAGATCGAGAAAGGTTTGAAGCTTTACCAGTCTAATGAGACGGGGAAAGCTCTGCAGGTCTGGATGAAGGTGCTGGAGAAGACGTCAGATCCTGGAGGGAAGTTTAGGGCTTTAGGTTGCCTGATTACAGCACACTCAGAGATGGGGAAATATAAAGAGATGCTAAAGTACGCCCTGGCTCAGATTGACACGGCGCGAGAGATGGAGGATCCAGACTACCTAACAGAAGGCTACCTGAACCTGGCCCGCAGTAATGAGAAGCTCTGCGACTTCCAGAAGACCATCTCCTACTGCAAGACCTGCCTAAATATGCAGGGCACCACAGTGAGTCTCCAGCTCAACGGTCAGGTGTGTCTCAGCATGGGTAATGCCTTCCTGGGCCTCAGCGTCTTCCAGAAGGCTTTGGAGAGCTATGAGAAGGCCCTGCGCTACGCTCACAACAATGATGACAAGATGCTGGAGTGCAGAGTGTGCTGCAGCTTGGGCAATTTCTACATTCAGTTAAAGGATTACGAGAAAGCCCTATTCTTTCCATGCAAAGCAGCCGAGCTGGTGAATGACTATGGAAAGGGGTGGAGCCTGAAGTACAGGGCCATGAGTCAGTATCACATGTCCGTGGCCTACAGGAAGCTGGAACGCCTGCCGGACGCCATGGAATGCTGTGAGGAATCAATGAAGATCGCACTGCAGCATGGAGATCGTCCTCTACAGGCCATGTGTCTCCTAAACTTCGCTGATATTCATCGCTGCCGAAATGATGGTGATAAAGCATTCCCTCGCTACGAGTCTTCAATGTGTATAATGACAGAGATTGGCAACCGTTTGGGACAAGCATCCATCTACTTGGGTGTTGGGAAGTGTTGGCTGCTGCAGAAAGATCCTGAAAAGGCCCTGGAGTCTCTCCAGCGTGCACATGATCTAGCAGAAGCAATAGGTAACAAGCTCTGTGCTCTGAAGGTGCACTGTCTGACAGAGAACGTCTACCGCAGCAGGGGGCAGCAGGAAGAGCTGAGGGAGCAGGTAGTGAAGTTCctgcagtgtgtggaggagctggagctctACTGCGGCATGTGTGGAGAGTCCATTGGGGAGAAGAACCAGCAGCTGCAGGCCTTGCCCTGCTCTCACATTTTTCACCTCAAGTGTCTGCAGACAAATGGAACACAAGGCTGTCCCAAATGTCGCCGTGCTTCCATGAAGCCTGGGTTTGTATGATGTTCAGTGATTACCAAGCCCGgcttcagacagacagacctgTCGCAGTGGCTCCACATGAGATAAAGATTGCAAGATTCTTTGCCGGGAGACACGGATACAGAACCACGGGAGTGTGTTCGGTTCCACACCTCTCAGTTCCTCAGGAATTAATATCTAGACTGAACAAACCATCCCACCAGTGGAAATAACCATACCAGAAAGCTTCAACAGTCTGCTCTCAGCGTGAAACTTGTGGAAAAGTGTGGGACTTTGAGGAGCCACCTCCAACTCATGACTCAAACCCTGGTTTGCTGGGCTAAGGCAGTGACTTGGGTAACTGCCTGAAAGACCATGTGATAAAATGGGCAATGAGTCAAAGATGTGCATACACATATCATCTTGCAGCTTCAGTCGATACTGCCTATGAGATCATGATTTCATGGATTTTGATTCAGGCTAACTTTCTATAACAAGACATTGTGTTGTTTGTTAAACTGCAACAACCTTGCAGGATTTCATTTCTTGTAATTAATTTTTATGTGGCAACGGTGTGCCATGAACAGACTTCTAAATCCTACCTATTTAAACACTATCACTTGAGAGAATACTAGTGTATATATACTTTGTAATACAAAAAAGGCTGCTTGTGAAACATATCAGTAAGTAGACAGTTTGATGGGACTTTTGTTGTTATAAAGGCAGCAAAGGCAGTTATCTCTGCTTGTTTGTCTTTATTTGAGAGATACCAAGATCTAGCAGCTGTTGTTTCAGTTTATTGGTCTACTGTTTAGATCAGGTATGTACTGTCAGATCCCAAATTATGTAATCTGAGTTATAGTTGTTCTATACATATATTTagttagatttattttttataaaatcgaCAGGCTAGCACAGGTCAAATGTTTCCACTACTTCCACTGCTtttcgggaaaaaaaaaacttgagataagaaatgttaaaatgcaatttttttcctcttgtactatttttatgttGTAATTTTGTAACATTGTGGTATCTGACATTTTAGAAATGCTTTGAAAATAACCCAAAAaattgtctttttctttctcttttttgtggctattttcattttaaatcatcCTTTGCTTCGTAACAGTGCCAGAAGGTTTCATGACAGGTGTCAGATGACAGTGCAAGACAGTGCTGCTGTGGTTAATTCAACTTATTCAAAAATTCAAGAAAAAAACTCTCTTTTGTACCCTGCATTCTCCAGCAACCCAGTTTCATTTAgtggtttattgtttgtaatGCTGGGTTGTAGATCATACGATTGTAGGTTCAATAGTCACATCAATTAAGCAGCAGTTGTTGAGCTCTTGTACAAGCCCTTTAACTCTTTCTGATCCAGGGGTGCCACAGCATGACTGACCTATGCATATTGACACTAATTTAACTAACCTAAAGGTGAGCAAGTAACCATACAGAACACAAGCAATGAGACTGAGAACCACTGATCTACTGCATGACTGCTCTGCTATTAGCTGCTCTTATTTAGTGTTCCATACAAAGGAATAAAGCACAACATTGCATGCATGTTCACAAAATACATCAACCTATTTGAGAGAATAGAAGGGTTAGTCTAATGTGGGACATTTTTGCATCAGGGTGCTTCCAGTTTTAAATATTGCTCCACCAAGTAAAATCTTCTAACAGATAAGGCACATCAGAGGGAGGAGGATTTTGCTGTATGGTATGCAGCGATTTcccataacattaataccacctccttgtttctacacattGCCTATTTTGTCAACGCCACCACAGGCTATATAGTCCACCTGTTGCACTGCATGCTCTTTTAGTAGTAtcctttcatcctgttcttcaaaggtcaggaccccacagagcAGGTACTATTTGTGTGGTGagtcattctcagcactacTGTGACACTGGCATGGTAGTAGTCTGTCAgcgtgttgtgctggtacaagtgaCAGAAACTCGTCTGTTTTTGAACGGTGTGTtagtcatcctctagtccttaaTCAGTGGTCAATGATTTCTTATAACTATACGGGAGCAATGTGAGATAATGCTGCTCTTCTCTGTGTGTATCTTTTCTTACGTGACTGTGTTAATTAAACCTTTCGTTCAAACAGACGTTTGTCCAACTTTACTAACATATTGCATGTTGCCCAATGTAGCTATCTCACATTCTGGCAACTCAAAGTCCATAACTACCTCTCTTTACATTTGTTCTTTACAATATTAGCATGTTTGTGCTTCAGAATCATATTGAAGCTCTGATAATGTACCTAAACATAGACTGAAATGTTTGAGAATTGTCCTAAAGGCGAATCATGTTGGGCCTTTTTTATAGTGAAAATGCAATAAACTATTCTTTGCTA

Function

symbol description
rapsn Predicted to enable acetylcholine receptor binding activity; metal ion binding activity; and protein-membrane adaptor activity. Acts upstream of or within chemical synaptic transmission and synapse assembly. Predicted to be located in synapse. Is expressed in muscle cell; musculature system; myotome; and pectoral fin musculature. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 11 and fetal akinesia deformation sequence syndrome 2. Orthologous to human RAPSN (receptor associated protein of the synapse).

NR:

description
43 kDa receptor-associated protein of the synapse

GO: NA

KEGG:

id description
K24924 RAPSN; receptor-associated protein of the synapse

RNA

RNA id representative length rna type GC content exon number start site end site
TU215692 False 1977 lncRNA 0.37 1 17983888 17985864
XM_007255981.3 True 5076 mRNA 0.44 8 17971096 17985904

Neighbor

gene id symbol gene type direction distance location
kbtbd4 kbtbd4,LOC107708223,LOC107738697,LOC107596956,LOC107672308 coding upstream 2160 17964383 ~ 17968936 (+)
ddb2 ddb2 coding upstream 12662 17949130 ~ 17958434 (+)
LOC103039437 tle3a,LOC108424090,LOC107596960,LOC107672253,LOC108264729 coding upstream 173348 17763691 ~ 17797748 (+)
LOC103024336 NA coding upstream 325847 17625054 ~ 17645249 (+)
morf4l1 morf4l1,LOC107596963,LOC107686360,LOC107738770,LOC107708218,LOC107672187 coding upstream 348968 17610877 ~ 17622128 (+)
LOC103029004 NA coding downstream 89 17985993 ~ 17994370 (+)
agk agk coding downstream 18103 18004007 ~ 18010554 (+)
wee2 wee2 coding downstream 38000 18023904 ~ 18030005 (+)
LOC107197792 LOC107197792 coding downstream 44584 18030488 ~ 18035696 (+)
cftr cftr,LOC107738689,LOC107583749,LOC107596947,LOC107708216 coding downstream 148813 18134717 ~ 18164724 (+)
G159122 NA non-coding upstream 24413 17942316 ~ 17946683 (+)
G159120 kif23,LOC107686310 non-coding upstream 33008 17926988 ~ 17938088 (+)
G159115 NA non-coding upstream 100628 17870007 ~ 17870468 (+)
G159028 NA non-coding upstream 371742 17596059 ~ 17599354 (+)
G159017 aagab non-coding upstream 514119 17455315 ~ 17456977 (+)
G159129 NA non-coding downstream 9794 17995698 ~ 17996728 (+)
G159182 NA non-coding downstream 122259 18108163 ~ 18109539 (+)
G159184 asz1 non-coding downstream 128101 18114005 ~ 18128429 (+)
G159272 NA non-coding downstream 425408 18411312 ~ 18411936 (+)
LOC111194744 NA non-coding downstream 427457 18413361 ~ 18413950 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other upstream 598890 17327100 ~ 17372206 (+)
zwilch zwilch other upstream 781845 17177675 ~ 17189251 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other upstream 798868 17101612 ~ 17172228 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other upstream 1172696 16779506 ~ 16798400 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other upstream 1245887 16654136 ~ 16725209 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other downstream 539624 18525528 ~ 18576437 (+)
G159666 NA other downstream 2199612 20185516 ~ 20186919 (+)
G159728 NA other downstream 2750694 20736598 ~ 20737049 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other downstream 3023398 21009302 ~ 21011794 (+)
fam174b NA other downstream 3074752 21060656 ~ 21074573 (+)

Expression


Co-expression Network