G159129


Basic Information

Item Value
gene id G159129
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 17995698 ~ 17996728 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU215695
AGCTATATCCACGGCCCCTGCCTTCATTTTCCCCTTTCCTTTGTCTGCTCCTTTGCTTTTCTTTGTGGACTGGCCTTTAGACTGGCCCTGTGGACCCATCTCAAGCCTTTTCTTTTCCTCCCGTTTTTCTTGCTCCCGCTGCATGCGCTCCAAATGCAGGCTTTTAAAATCAAGAGCAGGCTTCTGTGGTTGCTTGTTGGGCTCCTTTTCCAGCAGTTCCTCTGGAGCTTGGATCTCTTCTACTGTAGACTTCCCTGGTGTTGTTAGTTCCTTAGATGGTTCCTCTGCTGGTTCTTTAGATGCACCTTCTGGTACTATCTTGGAAACTGTAATACGGCGCTGTTTCCCTGTTCCTTGGCTCACATGCTTTAATCCCAGCTCCTCTGAGAGCTGATGAACCAGCAAACGTTCATGTGAGCTCAGAGAGGAAGGAAACTGGAGCTCGGTCTGGTTCTTTTCACTCAGAAAAACATGCAACTGCTGCCTTATTTGTTCTTTAATAATCTGAGACTCTTCTGAATCATCATGTGTGTTGGATTTTGGACATGTGGACGATGTGTTCTTGCTTTGTTGATTCTCAGACGGTGCTTTGCCCTGAACATCTCCCTTCTTTTTGTTCTCAAAGTCTTTCTTCTGCTTAGGGTCTCCTTTCTTGCCTTGCTGGGCTTTTGCCTTCAGTTTGGTTGAAGTGTCTTTGACATTAGCTGATTGCTGATTCTCTTGACTGCGGCTGTAGTTTTCAGGAACCACGTCCTCCAGGTACTCAAAGGCAGTTCGTACCTCTCCGTGCTCAGTCATGTAATCTACCAGGGATTTGAGGAAGTCATGGTTTCGGACTGTTTGAGAATCACACACCACCATGAGCTGACGCCTGGCTCGCGTTACTGCTACATTAATCCTCCTGTCCTCGGCAAGAAACCCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU215695 True 923 lncRNA 0.47 2 17995698 17996728

Neighbor

gene id symbol gene type direction distance location
LOC103029004 NA coding upstream 1328 17985993 ~ 17994370 (+)
kbtbd4 kbtbd4,LOC107708223,LOC107738697,LOC107596956,LOC107672308 coding upstream 26762 17964383 ~ 17968936 (+)
ddb2 ddb2 coding upstream 37264 17949130 ~ 17958434 (+)
LOC103039437 tle3a,LOC108424090,LOC107596960,LOC107672253,LOC108264729 coding upstream 197950 17763691 ~ 17797748 (+)
LOC103024336 NA coding upstream 350449 17625054 ~ 17645249 (+)
agk agk coding downstream 7279 18004007 ~ 18010554 (+)
wee2 wee2 coding downstream 27176 18023904 ~ 18030005 (+)
LOC107197792 LOC107197792 coding downstream 33760 18030488 ~ 18035696 (+)
cftr cftr,LOC107738689,LOC107583749,LOC107596947,LOC107708216 coding downstream 137989 18134717 ~ 18164724 (+)
LOC103028633 NA coding downstream 264437 18261165 ~ 18265803 (+)
G159122 NA non-coding upstream 49015 17942316 ~ 17946683 (+)
G159120 kif23,LOC107686310 non-coding upstream 57610 17926988 ~ 17938088 (+)
G159115 NA non-coding upstream 125230 17870007 ~ 17870468 (+)
G159028 NA non-coding upstream 396344 17596059 ~ 17599354 (+)
G159017 aagab non-coding upstream 538721 17455315 ~ 17456977 (+)
G159182 NA non-coding downstream 111435 18108163 ~ 18109539 (+)
G159184 asz1 non-coding downstream 117277 18114005 ~ 18128429 (+)
G159272 NA non-coding downstream 414584 18411312 ~ 18411936 (+)
LOC111194744 NA non-coding downstream 416633 18413361 ~ 18413950 (+)
G159274 NA non-coding downstream 431427 18428155 ~ 18428426 (+)
rapsn rapsn other upstream 9794 17971096 ~ 17985904 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other upstream 623492 17327100 ~ 17372206 (+)
zwilch zwilch other upstream 806447 17177675 ~ 17189251 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other upstream 823470 17101612 ~ 17172228 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other upstream 1197298 16779506 ~ 16798400 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other downstream 528800 18525528 ~ 18576437 (+)
G159666 NA other downstream 2188788 20185516 ~ 20186919 (+)
G159728 NA other downstream 2739870 20736598 ~ 20737049 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other downstream 3012574 21009302 ~ 21011794 (+)
fam174b NA other downstream 3063928 21060656 ~ 21074573 (+)

Expression


Co-expression Network