G159363


Basic Information

Item Value
gene id G159363
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 18727015 ~ 18728037 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU216023
CCAGCAGTCATGCTTTCACTCTCCTCATCTGGAGGAAGCACTTCAGTGTGGCGCAGACGGGCACGGCTGACGTCCTGAACTCCAAAGCTCAGTACTGGGTGTGTGAGCAGGAATTCTGAAACAGCTGTGAAACTGGCCCGACCCTTGTCCTGATCCTGAAGCAGCTCCATCACGTACAGAACCTGCACAACAgccatacaaaaaaatgaaaaagcatCATGTTCTAtaattttgccatgtcccatagaacataaataacactgcacagGACTCCTGCATTGATTGTGGACGTGACTTCTTTAAGTGTTATTTGTCTGCTTGCAGAACAACTTCAGTTAGATTCCAgaggtcatgatcattaccctttaccactcactgcactgtccactgtgggtggtaatgccttgcATGAAGTCCTGGTAAACGCaccactgtggatcaaggaatgttaacTGCCTGCTCAACTTAAGAAATAGGTTTTGTCCAAACACCACCTTTTAATGGGCATATTGGTACAGACCCAAAATGGCTGTAAAGagtaattaaaaagtaataagATTACATTTAGCTAGAAGGTTATAAGAGAAGTTTGTTGACTTaggtaaaataatgaataatggtGCCTGATGTACAACAATGTATTTTTACTAAGTGCAAAATTCAGCTATTTGCAAGGTTCTAATGGCAAAAATATTTAGATAGTGATCCACCTATTCAGTAAAACTGTCCTTGTTTTTGCCACAGTAGTGATCCTTTAGTCTCTTTAACAGTTAATATCATATTTCAGGTAATGCAGTTTGTCTAGCAAGCCCTGCTAAAGTTAGGCCAAGTCAggatgagtgagtgtgttttcACAGCAGTATTGTAAATAATAGATAGAAGAAGGTGCAGACCTTCCTCTGCACATCCGAGAGGATGAGGCACTCTGCAGAGAGATCCAGACTAGCTTTCAGACTGGGCTGGACACTTGAGTTTAACGGGTCAGGACTAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU216023 True 993 lncRNA 0.42 2 18727015 18728037

Neighbor

gene id symbol gene type direction distance location
LOC111194773 LOC106934266,LOC108233135 coding upstream 226196 18496094 ~ 18500819 (+)
chka chka,LOC108424340,LOC107738676,LOC107726368,LOC107694945,LOC107583738 coding upstream 235489 18472936 ~ 18491526 (+)
kmt5b kmt5b,LOC107738677,LOC107694947,LOC107596936,LOC107583742,LOC108264420,LOC107726382,LOC107672243 coding upstream 258736 18462098 ~ 18468279 (+)
arpin arpin coding upstream 291900 18415527 ~ 18435115 (+)
LOC103028633 NA coding upstream 461212 18261165 ~ 18265803 (+)
ranbp10 ranbp10,LOC107583731,LOC107733562 coding downstream 34648 18762685 ~ 18813328 (+)
ripor1 fam65a coding downstream 150098 18878135 ~ 18980992 (+)
ctcf ctcf,LOC107726208,LOC107583725,LOC107596920 coding downstream 255565 18983602 ~ 18991711 (+)
carmil2 carmil2,LOC107694932,LOC107733559 coding downstream 269016 18997053 ~ 19065156 (+)
cfdp1 LOC105419833 coding downstream 348045 19076082 ~ 19111677 (+)
G159350 LOC108438999,LOC107726468,LOC107694939,LOC107733575,LOC107596927 non-coding upstream 69613 18652757 ~ 18657402 (+)
G159349 NA non-coding upstream 74339 18652450 ~ 18652676 (+)
G159347 NA non-coding upstream 96162 18630470 ~ 18630853 (+)
G159344 NA non-coding upstream 111521 18613164 ~ 18615494 (+)
G159298 NA non-coding upstream 218320 18508411 ~ 18508695 (+)
G159365 edc4 non-coding downstream 4446 18732483 ~ 18734814 (+)
G159388 NA non-coding downstream 8365 18736402 ~ 18736673 (+)
G159389 nutf2 non-coding downstream 10247 18738284 ~ 18752154 (+)
G159398 NA non-coding downstream 58504 18786541 ~ 18810070 (+)
G159480 NA non-coding downstream 531259 19259296 ~ 19262326 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other upstream 150578 18525528 ~ 18576437 (+)
rapsn rapsn other upstream 741111 17971096 ~ 17985904 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other upstream 1354809 17327100 ~ 17372206 (+)
zwilch zwilch other upstream 1537764 17177675 ~ 17189251 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other upstream 1554787 17101612 ~ 17172228 (+)
G159666 NA other downstream 1457479 20185516 ~ 20186919 (+)
G159728 NA other downstream 2008561 20736598 ~ 20737049 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other downstream 2281265 21009302 ~ 21011794 (+)
fam174b NA other downstream 2332619 21060656 ~ 21074573 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other downstream 3419807 22147844 ~ 22152785 (+)

Expression


Co-expression Network