CI01000012_10196272_10198737 (HPS6)


Basic Information

Item Value
gene id CI01000012_10196272_10198737
gene name HPS6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 10196272 ~ 10198816 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_10196272_10198737.mRNA
ATGACGCGACTCGCATTGGAACAAGTAACTGATTTCGGCGATTTCACGAAAGGAAAGGATCTAAAGGAGTTTTTTAAACGAGCATACTCCAACATTTCTTCTCAAAACTGCCTGTCCGATGTGCGTCTGAGTCCAGATGGACGTCACATTCATGTCATTGTGCGTCAGCCCAAGAGTGGTCTTATGACATATGACAAATATCAGCGAGCCCATCCGATGCAAAGCCAGAAGCACATTGATTTAGTGCTAACTCGAAATGTGCCTATAGTAGATGTCATTTATATCCCTCAAAGCAAACCAGATGATGCAGCCTCTGTGCTGGGAGTGATTTTTGAGAATGGAAAAGCGGAATTCTGGAAATTCCTGGAGTGCAGATCAGGCTGGCATCTTCTCCAGACTGTGGATCTGTGTAACAGCCCTCGTGCAAAAGTAGTTTCTGTGTCTGTGTGTCAGAATTTCATCATATGGTGTGAGGAGCGACCACCATCAGAGAACTCCAATAGTGTGTGCAGCAACTTCAGGTTCTGTATTTGCAAAAAGACTGTAGAAGTTAATGAGGGGGGTGTCAGTTTGGGAAATGTGAAAATTGCATTGCATAATAATCCTCGATATACGACCATCAGTTCTGGGGATTTGGTCTATCTGCTCCCAGACATGCGGGAAAACTCTTCACTAGGTTTTTCTAAAGTGTTTATTGTATGGTCACCTGAACGTGACGCCTTTAAAGTGCATAGTGCCTGTAGTTGCACACTTATGAAAAGCTCAAGCAAAGAATCAGACTTCAAGAGGCTTGTTACAGACTTTATTGGCCTTCTATCCACACTAAATCCTCCTGATATCTGTGGATTCTCTCCCACTGGATGTGGAGACCTCCTTCTTCTCCTAAGCACTGGTTGGGTATGCATCATGAAGAGAGATGGCTGTCTCCGCAACATATACAAACTTCCTGATAACTGCCTAAGTGCTAGTGGGACCCAAAACAGCCTGAATATGTATAATGAAATCCTTGCATTAACAATAGGCAGGACCCTCTTCTTAATTGACACCAAATGTGGCCTGGAATTAGAGAGAATAAGTCTGAAAACGGAAGGTCTTCTCTTCGTAAACTCTTTGGACAGTCACTCTCCGCAAATGCTGTCAGAAACCGGGCTGTTTGTGGTCACGCAAAGACAGAAGCCTTCTCCGACACATTCAGAAGACTCAAGTGCACTTTTGGTTGAGGCTGTTTTCGAGGAGGCATGCAAATACTATCAGCAAAGAAGTCTAAGTAGCACACAACTCACGGTGGAGAAGCTCAAAAAAGGTGGGATGTTTCAAGCTCCCATATCGCTAGCTGCCATCCTAAGGGATTATCTCAGCAACCAGAAGACCAAAACTGTTGAGAAACATTCCTCAGGTCAAGAAAGGCTCATGAGCTCACTCGAATCAGAACTTAGGAGTCTCGTTTTGCTAGAGGACATCAAAACGTCAATGGTGAAGGCTTCTGAGAAAGATCTAGAGAACTATTGTGAAACATTGGTGCAGCAGGAGATCTGCCGGCTGCTTGGCGGTGAGCTAGAGAGGGAGAATCTTCAATACCTGAATAGCATCTTCCAACTCTTTCCCACTTATTCCTGGCGTGCCATGCAAGCGGTTCTGCATCTGAGGTGCAACGGTGAGGGATCATTGTCGTCCAAAGCTCCCGCTGAGTTGTGGAAGATCATCCTCAGCCCTGTGCAACCCACAGCGAACTTTGCTCACTGCAACGGTCAGCAGAAACACACTACGGTGAACCTGCCTGTTTTTGAGCTGTTGTGCCATTCCATCTTCAAATTCCAGCCTAGCTGGCTCCCCAGGTTTCTCGAATTGGCACAACAGCAGATGGGCACGACCAGGAGTTACGGTGTGAAGGAGAGCTCTGAGAGCTTGCCGCTCTATAAACGGGCCTTGACTGTGCTCCCTTGCAAAGAAACCTACCAACACCTGGAAGTAGAGCTGCTTTTGTGCAGCGAGAGGCCTAAAGCGATAATGCAAGCATTGCGGATTCTCATTGAGCAAAGCCAGTGGGAACGGGTGACACAAGTAGCTGAGAGGTTCTGCCGGAAGAGCCAACTTCTGAACAAAGAGATTTTCGATGCTCTGTTGTGCGAAGTGTCCCAGCATCGAGACCTGGACCCTTATTTGGACCTGCTGTGGACTCTTTGTCCAGAGGACATGACTGTGACGAGCATACTAAATATTGTACTGAAAAACCTGCCGGATTCAACGCAGAACTCGGGACCATTCGAAGTTCACGGCAGCCAGGTCACAATTGGGCTTTTGAAACCGCTCCTCAGAAAAGTTCTCCAAAGGGAGACCAAACCCAGCCACAGGTACGCAGATATTCTTCAGTCACCCACAATTCCTCCGCTCACGCCTCCACGCCAGCCAAAGGGACTGTTCAGAGATGCTGAGAACCAGGAAACCAAGCAGAGGACTTCCTCTTGATCTCAAGTGACATCTAGAGCCAGCCTGGTCTGACTTTCCCACTCACAAATCATATCTAAAACCTTTCCGTAGACTGTTA

Function

symbol description
hps6 Enables GTP-dependent protein binding activity and small GTPase binding activity. Involved in lysosome localization and protein localization to membrane. Located in lysosomal membrane. Part of BLOC-2 complex. Implicated in Hermansky-Pudlak syndrome and Hermansky-Pudlak syndrome 6.

GO: NA

KEGG:

id description
K20192 HPS6; Hermansky-Pudlak syndrome 6 protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_10196272_10198737.mRNA True 2545 mRNA 0.47 1 10196272 10198816

Neighbor

gene id symbol gene type direction distance location
CI01000012_09977219_09983804 NA coding upstream 212406 9977011 ~ 9983866 (+)
CI01000012_09828421_09828926 NA coding upstream 366884 9828421 ~ 9829388 (+)
CI01000012_09815706_09822346 CHATA, CHAT coding upstream 373601 9815706 ~ 9822671 (+)
CI01000012_09812937_09814478 SLC18A3, SLC18A3A coding upstream 380855 9812421 ~ 9815417 (+)
CI01000012_09796386_09801947 RGR, RGRA coding upstream 393728 9796291 ~ 9802544 (+)
CI01000012_10223957_10235955 NA coding downstream 24881 10223697 ~ 10236276 (+)
CI01000012_10244843_10249396 NA coding downstream 46027 10244843 ~ 10249499 (+)
CI01000012_10260457_10272063 NT5C2B, NT5C2, NT5C2A coding downstream 60919 10259735 ~ 10272262 (+)
CI01000012_10296725_10299883 CYP17, CYP17A1 coding downstream 97812 10296628 ~ 10301555 (+)
CI01000012_10469322_10470665 LBX1A, LBX1 coding downstream 269767 10468583 ~ 10471373 (+)
G75277 NA non-coding upstream 2274 10192989 ~ 10193998 (+)
G75272 NA non-coding upstream 56203 10138297 ~ 10140069 (+)
G75311 NA non-coding upstream 102102 10093847 ~ 10094170 (+)
G75258 NA non-coding upstream 132580 10063382 ~ 10063692 (+)
G75148 NA non-coding upstream 208548 9987365 ~ 9987724 (+)
G75339 NA non-coding downstream 15746 10214562 ~ 10214804 (+)
G75340 NA non-coding downstream 16100 10214916 ~ 10215219 (+)
G75276 NA non-coding downstream 75849 10274665 ~ 10277003 (+)
G75349 NA non-coding downstream 94397 10293213 ~ 10293445 (+)
G75355 NA non-coding downstream 120177 10318993 ~ 10319285 (+)
G73578 NA other upstream 1828645 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 2388417 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 4271967 5922385 ~ 5929186 (+)
G71623 NA other upstream 4379667 5813517 ~ 5816605 (+)
G71548 NA other upstream 4634839 5550493 ~ 5561433 (+)
G75533 NA other downstream 946001 11144817 ~ 11145739 (+)
G76385 NA other downstream 2431939 12630755 ~ 12675666 (+)
G76374 NA other downstream 2546715 12745531 ~ 12749169 (+)
CI01000012_13029637_13033226 RGS17 other downstream 2816690 13029435 ~ 13038899 (+)

Expression


Co-expression Network