G159666


Basic Information

Item Value
gene id G159666
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 20185516 ~ 20186919 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU216418
aaaacGACAAAATATCAGAAAAGCTTAAATAAAGGTAATGTATTGTACAAATACAGTGACAGTGTTTTACATTGAAAACTAGAGAAAACTTTTATCAAAGTTTTAGACCTGTGGGATTACAGAGGTGGAATAGGTACCATTTACCTTTCCCAATTTACCCTCAAATTACAACATTTACACAATTACCCCAACGCACACGCACACATCTACACACTCTGCCTCGAAAGACgctataataaaatgtttatttgcagtTTTGGGTGAATGCATTAGAATGTAGCTCTCTCCTCCCACTCCGAAAGTGTATATGTAGCGGGACCCTCCCTCTTTAGAAATGGGACTGCAGGCTCTATCATTAGATCGGATGGCAAGTCTTTATACAAAGTGTTTTGCATAATTACATACCAAAGCCAGAATAGCCACCCTCAAATTTTATGGGTCACAAAGCATCCACAATTGCCACATTATTGCCCACCGAAGTCCGGCCCAAGCAATGACAAGGAATGAAAAAATCTCATCTGCCTAATCTAAGCCTTGGAGATTGAATTTtcattctaataataaaaaagtaaagaagatTATTTCCAAACTGACAACTTGTTTACATATAGTTGTAAAGTTCAGAGGACTGGCCAAGACTTGAGGGAGTGTGATTAGAGAGTGCACACTCAATCTAGCAGTGTAAAGAGAAAGCCTGTAGAGAGCAGATTAAAACTCCCCCCATCCACACTGGGAACCATGTCCACCTTTGTGTTAATGCCATTAAGATATTTGGCCATAATGCAGCTTGTGTGCTCTCTGAATTATGCAGTGTTCCGTTATGTGCAAAATGTAAACCCAGAGCTACTCActctcactttatctctctctctctctccctctgttatATTAAATTGGCAAAAATACAAGAGCAGCTACCTGAAtatcatccatctatccacgAGAGTATACccgagaaaaagaaaagagaaactgAGCTATACAAAcgacaaaaacattttaaaggaaCATGTCATGCGTGCGCGATCGGTAAAACACCCAGACACCCTTTTATTAACGGAGCATAGGGATATCTCACAGTCTCTTCCGAGCACAGTCACTGTCTTTCTTCCAGGAATGAACACAgatttagaattaaaaaatgCGACCAATTaccttaaaaagaaaaatgtcagAGTTAAGACACTCTCTCCTCAATGTTATCAGTGTTAAAACTTAAACAGTCACGTGAAAAATAATACAAAGCAGAATACTGAGgagtaaaaataacaaatgaataaaaaataaaaacatgaaagctgcggaagaaaagaaaactaaTGTAAAGCaggacaaaacaataaaaaaaattagtggataattaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU216418 True 1365 TUCP 0.37 2 20185516 20186919

Neighbor

gene id symbol gene type direction distance location
LOC103025942 NA coding upstream 337958 19775339 ~ 19847558 (+)
mef2a mef2a,LOC107715609,LOC107690382,LOC107715212 coding upstream 413389 19666624 ~ 19772127 (+)
LOC111194775 NA coding upstream 664963 19515607 ~ 19520553 (+)
fan1 NA coding upstream 673291 19500023 ~ 19512225 (+)
cbfb cbfb,LOC107715607,LOC107715210 coding upstream 688941 19451775 ~ 19496575 (+)
arrdc4 NA coding downstream 479325 20666244 ~ 20674227 (+)
lysmd4 NA coding downstream 558649 20745568 ~ 20751796 (+)
rgma rgma,LOC107715216,LOC107690376,LOC107715612,LOC107693037 coding downstream 799705 20986624 ~ 21007290 (+)
LOC103034607 si:dkeyp-59c12.1,LOC108431221,LOC105905574,LOC107715203 coding downstream 1064785 21251704 ~ 21255960 (+)
LOC103034933 LOC108431189,LOC101061116 coding downstream 1168200 21355119 ~ 21371584 (+)
LOC111194777 NA non-coding upstream 23440 20145702 ~ 20162076 (+)
LOC103038177 NA non-coding upstream 520377 19607416 ~ 19665139 (+)
G159588 NA non-coding upstream 554844 19627846 ~ 19630672 (+)
G159585 NA non-coding upstream 598544 19586448 ~ 19586972 (+)
G159583 NA non-coding upstream 599679 19585408 ~ 19585837 (+)
G159663 NA non-coding downstream 19145 20206064 ~ 20207105 (+)
G159662 NA non-coding downstream 20308 20207227 ~ 20213526 (+)
G159677 NA non-coding downstream 69588 20256507 ~ 20257213 (+)
G159705 NA non-coding downstream 261539 20448458 ~ 20448783 (+)
G159706 NA non-coding downstream 268892 20455811 ~ 20456164 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other upstream 1609079 18525528 ~ 18576437 (+)
rapsn rapsn other upstream 2199612 17971096 ~ 17985904 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other upstream 2813310 17327100 ~ 17372206 (+)
zwilch zwilch other upstream 2996265 17177675 ~ 17189251 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other upstream 3013288 17101612 ~ 17172228 (+)
G159728 NA other downstream 549679 20736598 ~ 20737049 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other downstream 822383 21009302 ~ 21011794 (+)
fam174b NA other downstream 873737 21060656 ~ 21074573 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other downstream 1960925 22147844 ~ 22152785 (+)
G160134 NA other downstream 2666493 22853412 ~ 22854081 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G30406 NA non-coding NC_048565.1 CM023219.2 29651350 ~ 29651856 (+)
tiger barb (Puntius tetrazona) G23279 NA non-coding NC_056701.1 CM032070.1 24563318 ~ 24563888 (-)