G159731


Basic Information

Item Value
gene id G159731
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 20752115 ~ 20752674 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU216497
CATGTATGTACAACTTTCTAAGTTTAATGGACGAACTTTCGTGTCTTTTAAAgtctgttaatttttttgtttgccaaagaaaaagaagataaaggAGTGGCgtttctcaatcctggtcctATTGCCCAATTGGCCTGCACATTTTAAAGCTCTTCCTGCTTTAAACACAACCTTGCTGCTGAAAAGACTTGTTATTGAGCTGGGGTGGGTTTCACAAAACGTTCTTAGCACTAACTACATTCTTAGATCCATGTTAAGATGTTCTTaatgataaaatgtttttgggAAACTGGGCCCTGATTAGTTGTGCAGGATTGGGTGGGCACCAGGACCAATATTGAGAGCAGTTTCACAGTGTCCGAGTATtgctttaaccctcctgttatgtttaactataaaaaacagcagcaattaaacaaaaaaggtacttaccaataaaaatacttaataGTTGAAGTAATCAGTATAACCAAGATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU216497 True 477 lncRNA 0.37 2 20752115 20752674

Neighbor

gene id symbol gene type direction distance location
lysmd4 NA coding upstream 319 20745568 ~ 20751796 (+)
arrdc4 NA coding upstream 77888 20666244 ~ 20674227 (+)
LOC103025942 NA coding upstream 904557 19775339 ~ 19847558 (+)
mef2a mef2a,LOC107715609,LOC107690382,LOC107715212 coding upstream 979988 19666624 ~ 19772127 (+)
LOC111194775 NA coding upstream 1231562 19515607 ~ 19520553 (+)
rgma rgma,LOC107715216,LOC107690376,LOC107715612,LOC107693037 coding downstream 233950 20986624 ~ 21007290 (+)
LOC103034607 si:dkeyp-59c12.1,LOC108431221,LOC105905574,LOC107715203 coding downstream 499030 21251704 ~ 21255960 (+)
LOC103034933 LOC108431189,LOC101061116 coding downstream 602445 21355119 ~ 21371584 (+)
pex11a LOC108431222,LOC107714788,LOC107556261,LOC107690406,LOC107715221,LOC107691149 coding downstream 704682 21457356 ~ 21461379 (+)
LOC103031832 NA coding downstream 879086 21631760 ~ 21699721 (+)
G159709 NA non-coding upstream 221390 20530473 ~ 20530725 (+)
G159706 NA non-coding upstream 295951 20455811 ~ 20456164 (+)
G159705 NA non-coding upstream 303332 20448458 ~ 20448783 (+)
G159677 NA non-coding upstream 494902 20256507 ~ 20257213 (+)
G159662 NA non-coding upstream 538589 20207227 ~ 20213526 (+)
G159734 NA non-coding downstream 126 20752800 ~ 20753254 (+)
G159739 NA non-coding downstream 97680 20850354 ~ 20850931 (+)
G159744 NA non-coding downstream 144477 20897151 ~ 20897538 (+)
G159777 NA non-coding downstream 324545 21077219 ~ 21077425 (+)
G159778 NA non-coding downstream 328042 21080716 ~ 21081329 (+)
G159728 NA other upstream 15066 20736598 ~ 20737049 (+)
G159666 NA other upstream 565196 20185516 ~ 20186919 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other upstream 2175678 18525528 ~ 18576437 (+)
rapsn rapsn other upstream 2766211 17971096 ~ 17985904 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other upstream 3379909 17327100 ~ 17372206 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other downstream 256628 21009302 ~ 21011794 (+)
fam174b NA other downstream 307982 21060656 ~ 21074573 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other downstream 1395170 22147844 ~ 22152785 (+)
G160134 NA other downstream 2100738 22853412 ~ 22854081 (+)
G160306 NA other downstream 3366455 24119129 ~ 24119825 (+)

Expression


Co-expression Network