G159748 (chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375)


Basic Information

Item Value
gene id G159748
gene name chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 21009302 ~ 21011794 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU216515
TTGCATGACGTAGGAAAGTTTAATACATATAGGTCTATAAACAGTATGTACAGCATAGTTCACATGAACAGTGGcttctttttttcacaaatataAATTACTTTCATTGGCTTATCTGAAATAACACAGGTCCATGAAGTGTGCAGGCTGGAGCTGCAGCAGGAGGGAGAGAGGTGAGGTCTGGACTCCTTGTAACACTCATAACACTCTTTAGTTCTTCAGAAGaagatacaaaaaaacactcctCCCTCTCAGCCTCTCAGCACAGTCCGTATATTGTTCCCTGCCCATCAGCAACTTCTCGCGCCTTGATGTCCATCACATCACCACAGCCTAATACTGCACAGTCTCTGTCCTTAAAGACCACCAAGAAAAAAACGCCACCAGAGTTTCCTTAGACAAGAATAAGGCACAGATGgagggaaacaaaaaaaaaggaaatagaaAACGAAAAACTGAGCAATATTATTTGCCAGCTCTCCAGTCCAGTCTTGTGTTGTTTTGGCACTTTAACTGGAACTGGAGGACTAAAAATAGCTTGACGTACGTTCCCGCTCCCTTCTGTTTTTTCCGACGCACGCAGCGCCAGCGTTTCCATTTAAAGGTCAAACATATCAAACAACTTTTCAACACACTCACAcgaaaggaggaaaaaaaagaaaaaataattaaagaacaatgttcattgtttTACTCTAAACGGAACAGTGGACAGTTGTGTAGAGATGTGTAGAGTCCAATACTTACTTTTAGTGCAATACCAAGATCTGCCTTTCCTGATTGTTAGCATTGTGATAGCATATTCTTACTGACAGGacagaaaagaggaaaagaaaagagagaaatttCAGCTGAAAGGCTGAAAAGAAGAGTAAAAGTAGCTTTAGAGCTTTTTTACCTTTGTATTTTTAGCTAGTGTTCTCTGTGAAGAAGAAGTGACACTGAATTTAGTTTGTATCCAGTCTTTTAAGCTCACACATAGATGGGGGCTATGTTGTGGGCTGCAGTGGGCtaattctgtgctgtgctgtccactgcTAATTCAAATGTCTTGACcatacaatcaatcaatcaatcaatcaattaattaattaataatttcatGAGACCAGTTACAAGCATACATGTACATGTACACATACACAAGATACAGATTCTGCCCAGGATCAACCCCATCAATGATTACGATTAACCCAAAACATGATCAAAATGACTACAGAAAGAAGGaagatgatgattatgatgacgatgatgaccTGAAATCTAAAGGTGCACtcttacacacacacaaaaccaggTCAATTTTAGAGCATCCAATTCTTCTGGTCAATTTTAGAATATATCAGAATATCCTAATTTGGACTGTGGATTCCAGAGTccctggaggaaacccacacagacacggggagaacatggaaactccacccagacagagacttgaacccaggactcCAGCGCTGAGAGGCTCTGCTTGTGTTTCCCCAGTCAATTATTCACGCTACGCTcaaaactttttgttttcattctgcacaaaacaaaccaacaaataaaattaaataataaaatgaaaaagaaacaaacatcaAAAGAACATCTGCTTTGGAAGAATTCCTAAAtctattaatgttattaactttcccaaataaagtaaataaaaggaaaaaaagaaagaaaagaatgcATGAGGCACTTTCCAGCTTCTAACTCTGTCACATAATTCAAAGGCtttattcagttcagtttgttcaCATAATAATAGTCCATAGGACTAACTGGGCTTCACCGTTCCGTTTCCGTTTTAGATCTTTCTCTGTCCACCTGGGCATTATTGTCATTAGCATCCAGAAGAGAGCACAGGACACACTGGCTGAGCTCCAGATGTTGGATCTTCATTTAGCTTCACACACAGCTGTTGGTGGACAGAAGGgcggtggtagtggtggtggtggtagtatctgGTCAAGATGGCCCAGTCGTGCCtactacaacaacaacaacaagggCCAGAAGGTCTCCTCCCTGCAGTGTCCACCAAGCATCATCCtccccactcagagagagagtggaCTCAAGCCTGGAATCATGTCTTCCTGTTGTTCCAGTTGCCTTCGGCCGCAGGTTTCTGCTCGGCGGTCCTCTCGAGGGGCGACAGGGACTCTAGGGGGGATTTCTGGGACTGTGGGGAGCGAGGGTCTATGAGAGGAGGGGGCTTGTCTGAATGAAACGGCCGATAATGGTCAGGCCCCGCCTGGCCGTGGTTCCCTGGGACGCCCCTGTGATCAGGCATCCTCCTGAAGTCCTGAGAGtagcttcct

Function

symbol description
chd2 Predicted to enable several functions, including ATP binding activity; DNA binding activity; and DNA helicase activity. Acts upstream of or within chordate embryonic development and locomotion. Predicted to be located in nucleus. Used to study childhood onset epileptic encephalopathy. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy. Orthologous to human CHD2 (chromodomain helicase DNA binding protein 2).

NR:

description
PREDICTED: chromodomain-helicase-DNA-binding protein 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU216515 True 2315 TUCP 0.42 2 21009302 21011794

Neighbor

gene id symbol gene type direction distance location
rgma rgma,LOC107715216,LOC107690376,LOC107715612,LOC107693037 coding upstream 2012 20986624 ~ 21007290 (+)
lysmd4 NA coding upstream 257506 20745568 ~ 20751796 (+)
arrdc4 NA coding upstream 335075 20666244 ~ 20674227 (+)
LOC103025942 NA coding upstream 1161744 19775339 ~ 19847558 (+)
mef2a mef2a,LOC107715609,LOC107690382,LOC107715212 coding upstream 1237175 19666624 ~ 19772127 (+)
LOC103034607 si:dkeyp-59c12.1,LOC108431221,LOC105905574,LOC107715203 coding downstream 239910 21251704 ~ 21255960 (+)
LOC103034933 LOC108431189,LOC101061116 coding downstream 343325 21355119 ~ 21371584 (+)
pex11a LOC108431222,LOC107714788,LOC107556261,LOC107690406,LOC107715221,LOC107691149 coding downstream 445562 21457356 ~ 21461379 (+)
LOC103031832 NA coding downstream 619966 21631760 ~ 21699721 (+)
LOC103025486 fli1,LOC107692484,LOC106612965 coding downstream 988866 22000660 ~ 22061810 (+)
G159744 NA non-coding upstream 111764 20897151 ~ 20897538 (+)
G159739 NA non-coding upstream 158371 20850354 ~ 20850931 (+)
G159734 NA non-coding upstream 256048 20752800 ~ 20753254 (+)
G159731 NA non-coding upstream 256628 20752115 ~ 20752674 (+)
G159709 NA non-coding upstream 478577 20530473 ~ 20530725 (+)
G159777 NA non-coding downstream 65425 21077219 ~ 21077425 (+)
G159778 NA non-coding downstream 68922 21080716 ~ 21081329 (+)
G159781 slco3a1,LOC107690372,LOC107601651,LOC107715617,LOC107693030 non-coding downstream 77949 21089743 ~ 21126096 (+)
G159790 NA non-coding downstream 134479 21146273 ~ 21206671 (+)
G159836 NA non-coding downstream 424055 21435849 ~ 21443252 (+)
G159728 NA other upstream 272253 20736598 ~ 20737049 (+)
G159666 NA other upstream 822383 20185516 ~ 20186919 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other upstream 2432865 18525528 ~ 18576437 (+)
rapsn rapsn other upstream 3023398 17971096 ~ 17985904 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other upstream 3637096 17327100 ~ 17372206 (+)
fam174b NA other downstream 48862 21060656 ~ 21074573 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other downstream 1136050 22147844 ~ 22152785 (+)
G160134 NA other downstream 1841618 22853412 ~ 22854081 (+)
G160306 NA other downstream 3107335 24119129 ~ 24119825 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 5312026 26323820 ~ 26345682 (+)

Expression


Co-expression Network