G159778


Basic Information

Item Value
gene id G159778
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 21080716 ~ 21081329 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU216549
TTAAAAGCACACAacgcaatattttttttaggtaattAACACGTTTCATAATGTTTTAGATGATTAAATGGGTAATTACAAGGTGAATAATGGTTTTCTCTTCTGCCCCTGTAGTCTgtggggaaaataaaaaaaggttgcaAGTTCAGGAGCCCTCGGCCTCACAAATTTTGTGCATTGCGAGAGTCAGTCTtagcaagaatagagctggtgagatctttttATGTGacagtgattttgtgcaaataacttAATAACCCTGTTTTGTATAGCACATAGACCCATGTTGACTTGTGTAAAAAAAGGTATAATATGTCCACTTCCAAATTTTAAATTTGCTTGTTTAATAAACACTTTTCTCCTCCTCATTTCTCGTCTCTCTAACTTCCTGTATCTcttgtttcacattttaagtcCTATAAAGTTCTGTAGCAGCAGCATTTTTGTAGCAGAATCACTGTATTGTGGTTTGTTATTTCTGTGGGATGTGAAAATATTCAGTtttcaataaaaacaattaaattgtagttttgtaatggGAATGTTCTCTTTGAAAAGCTAGTCAACATACATTTagtatatttgatttatttcgGTGGGAAAATTgtggaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU216549 True 614 lncRNA 0.33 1 21080716 21081329

Neighbor

gene id symbol gene type direction distance location
rgma rgma,LOC107715216,LOC107690376,LOC107715612,LOC107693037 coding upstream 73426 20986624 ~ 21007290 (+)
lysmd4 NA coding upstream 328920 20745568 ~ 20751796 (+)
arrdc4 NA coding upstream 406489 20666244 ~ 20674227 (+)
LOC103025942 NA coding upstream 1233158 19775339 ~ 19847558 (+)
mef2a mef2a,LOC107715609,LOC107690382,LOC107715212 coding upstream 1308589 19666624 ~ 19772127 (+)
LOC103034607 si:dkeyp-59c12.1,LOC108431221,LOC105905574,LOC107715203 coding downstream 170375 21251704 ~ 21255960 (+)
LOC103034933 LOC108431189,LOC101061116 coding downstream 273790 21355119 ~ 21371584 (+)
pex11a LOC108431222,LOC107714788,LOC107556261,LOC107690406,LOC107715221,LOC107691149 coding downstream 376027 21457356 ~ 21461379 (+)
LOC103031832 NA coding downstream 550431 21631760 ~ 21699721 (+)
LOC103025486 fli1,LOC107692484,LOC106612965 coding downstream 919331 22000660 ~ 22061810 (+)
G159777 NA non-coding upstream 3291 21077219 ~ 21077425 (+)
G159744 NA non-coding upstream 183178 20897151 ~ 20897538 (+)
G159739 NA non-coding upstream 229785 20850354 ~ 20850931 (+)
G159734 NA non-coding upstream 327462 20752800 ~ 20753254 (+)
G159731 NA non-coding upstream 328042 20752115 ~ 20752674 (+)
G159781 slco3a1,LOC107690372,LOC107601651,LOC107715617,LOC107693030 non-coding downstream 8414 21089743 ~ 21126096 (+)
G159790 NA non-coding downstream 64944 21146273 ~ 21206671 (+)
G159836 NA non-coding downstream 354520 21435849 ~ 21443252 (+)
G159864 NA non-coding downstream 410060 21491389 ~ 21491751 (+)
G159868 NA non-coding downstream 427266 21508595 ~ 21508833 (+)
fam174b NA other upstream 6143 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 68922 21009302 ~ 21011794 (+)
G159728 NA other upstream 343667 20736598 ~ 20737049 (+)
G159666 NA other upstream 893797 20185516 ~ 20186919 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other upstream 2504279 18525528 ~ 18576437 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other downstream 1066515 22147844 ~ 22152785 (+)
G160134 NA other downstream 1772083 22853412 ~ 22854081 (+)
G160306 NA other downstream 3037800 24119129 ~ 24119825 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 5242491 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 5535933 26617262 ~ 26755313 (+)

Expression


Co-expression Network