CI01000012_10223957_10235955


Basic Information

Item Value
gene id CI01000012_10223957_10235955
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 10223697 ~ 10236276 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_10223957_10235955.mRNA
CTATTAAAAGATTCTGCTCTTATTTCAAACATTTATCGCATGTGTATCTGTAGCAACTTGTTCCTAGCAAGTCTCTATATTTGTCTACTGCAACGACAAACTTGATAGCCTAGCTTAGCCAGCCCTGGCTCTGAGTCCGAGCACAGGCGAGGCCCTGCACAGGTTAGCCGATTATCCGAACAGCGTAAACAGCATCACCATGGCGACGAAATTCAGAGCATTTATTTCCGCGCTTTCTCGTTTTAAAACTAAGCGTTGCTATGAATTTACGTTGCATGGAAGCTCAAGCACACCTGCAGGAATCCAAGCAGGAATTCGACGCTCTCTCTCCCCGGTGCTCCCTGATTATAATCCCGGTCTGTCGGTCGCTGTTTTTAAAACGAGGTGAGCTGAAACATCGGCCCCTTCAAACCATCGTGGTGTGCAAAAAACAGGTACAAAATGCAGTTGCAGCGCTGGTAGTAGTAGACTGTGTTAAACAAGAACCGGACTCAAGGGGCAACGAGGAAAAGTGCCCGTGCAACCCTTTGTTCTTGATCATGAACAATGGTACAGGCCCTTCTTTCTCTCCGTGCAACCCCCCTCAACACTCCCTGCTCTGGTGGAGCATCAACCCCTCGCATTCCCATCCAATCAAACCCACCCCTCCCCCAGACACACGCTACTACTGCCTGCTTTCAGTACAGATTGCCTCTGTGGAGAAAACTCCATCCTTCACCGCCATGGCTGACAAAATCTCTCTCCCTGATGAGGCCTCTGCTTCCCTCGCAGTGCTCCAGGGGCTCTTTGTTATGCCACTGCCTCATCTCTCCCAAACACAAGCACAGGAGGAGCCATGTGCCTCGCGCTCACCCAGGCTGCTCACAGCTACACGGCTGGCAGAGCGCGATAATGCTCTGGCGACAGACGACATATGTGATGATGTTCTGATGACCCAGCAGGGATCAAACTGCCTCTTCAGGCCTTATAAAGCTCCTGCTCTACAGGTGACGGCGCACACTGGGCTCCACAGCAAAGTCAACATATGCTACATCACTGCTTCCAGCATGCTTGACCACACTCAAACAAGCTACGCACATTCATTCACAGTCCACGCACTGTTAGCATGGGCTTCTTCTGAGAAAGAGAAACAGGCAGAAAGGGGTGGGGAGTCAGTAGGAGGAGGGCACAAAAATCAAAATGTAGAAACAAGAGCTCAGCGAGAAACAGGAAGTAGGAATTACACTCCTGCTCGACACTGCGCCCAGAGACTCATTGGCTATCTCATAGTCCCAAAGGACAGACAGAGGTCCCTGTCCACATGGCACCCACTCTGTGTCAGCCCCGCGATCGACCCGACGCCTCCCCCGCTTTGCCCTGCTTCTCCCTTCTCAAAGCCTCTCCCTCCAGTGGGCTGTGCTTCTAACTACCGAATCTCACACACCACTGGTCCCTGTCAAAGCCGCCTGACAACTCCAGAGAGGGGGCCGAGAAGGAGCTGCGGTCCAAAATGCATCACACACTCTCACACTCCAACTCACGGCTCTGCTGAAAACAAAGATGATCCCTCCTCTGTCTTTCCTCTGACACCACCATTGTTGAAGCCTAGATGTTTACCTGCGTGCGCTGACACTCACTCACCTTCCCTCGCAGTTACGACGGCGTTCCTGGTGCTGTCGCGCTGTCGAGAAACAAACAGAGAGGAAGGATCTATAATCAACTCCTGATCCAATTAAGTGCGTGAAAAGAATAACAACAAAAAAGGGAAAAAAACAAGTCGATTTATCACCACTTGAATTTAAAAAAACAAAACAAATGAATCTAATCAAGTTAAGAAATGTTCCACATTGTTTGCCTCTCCACAATTTACCTCTTTGAGGTCTGTGCTGTTTGTGGTAGTCGAAGCTCGGTGTATTGATGATCTGGAGCTGGGTCAATTAGCCCTAAAAAGCATGGACAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACGTAGAGGAGAGCAAAAGGAGGAGGCGGGAGAGAGCGCATGGATCCACTGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_10223957_10235955.mRNA False 2027 mRNA 0.50 8 10223697 10236276

Neighbor

gene id symbol gene type direction distance location
CI01000012_10196272_10198737 HPS6 coding upstream 24881 10196272 ~ 10198816 (+)
CI01000012_09977219_09983804 NA coding upstream 239831 9977011 ~ 9983866 (+)
CI01000012_09828421_09828926 NA coding upstream 394309 9828421 ~ 9829388 (+)
CI01000012_09815706_09822346 CHATA, CHAT coding upstream 401026 9815706 ~ 9822671 (+)
CI01000012_09812937_09814478 SLC18A3, SLC18A3A coding upstream 408280 9812421 ~ 9815417 (+)
CI01000012_10244843_10249396 NA coding downstream 8567 10244843 ~ 10249499 (+)
CI01000012_10260457_10272063 NT5C2B, NT5C2, NT5C2A coding downstream 23459 10259735 ~ 10272262 (+)
CI01000012_10296725_10299883 CYP17, CYP17A1 coding downstream 60352 10296628 ~ 10301555 (+)
CI01000012_10469322_10470665 LBX1A, LBX1 coding downstream 232307 10468583 ~ 10471373 (+)
CI01000012_10489814_10496226 TLX1, TLX1.L coding downstream 253451 10489727 ~ 10496584 (+)
G75340 NA non-coding upstream 8478 10214916 ~ 10215219 (+)
G75339 NA non-coding upstream 8893 10214562 ~ 10214804 (+)
G75277 NA non-coding upstream 29699 10192989 ~ 10193998 (+)
G75272 NA non-coding upstream 83628 10138297 ~ 10140069 (+)
G75311 NA non-coding upstream 129527 10093847 ~ 10094170 (+)
G75276 NA non-coding downstream 38389 10274665 ~ 10277003 (+)
G75349 NA non-coding downstream 56937 10293213 ~ 10293445 (+)
G75355 NA non-coding downstream 82717 10318993 ~ 10319285 (+)
G75356 NA non-coding downstream 84266 10320542 ~ 10320760 (+)
G75429 NA non-coding downstream 223812 10460088 ~ 10460387 (+)
G73578 NA other upstream 1856070 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 2415842 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 4299392 5922385 ~ 5929186 (+)
G71623 NA other upstream 4407092 5813517 ~ 5816605 (+)
G71548 NA other upstream 4662264 5550493 ~ 5561433 (+)
G75533 NA other downstream 908541 11144817 ~ 11145739 (+)
G76385 NA other downstream 2394479 12630755 ~ 12675666 (+)
G76374 NA other downstream 2509255 12745531 ~ 12749169 (+)
CI01000012_13029637_13033226 RGS17 other downstream 2779230 13029435 ~ 13038899 (+)
G76645 NA other downstream 3415583 13651859 ~ 13652234 (+)

Expression


Co-expression Network