G159891


Basic Information

Item Value
gene id G159891
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 21752505 ~ 21752999 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU216698
aaccacacacacacaccaaaatacaagttaagataaaatatgaaaacgaacataataaagcataaataattaaattgaattgcgggccagatgtatgtttattttgttaacccgtgaggggccgtatgaaaccgcgtgggccggtactttgagacccctggtgtaatgtaaaggtgtaatagtgttgagggaaggtataatattgttaagggaaggtgtaatgttaaaggtgtaatagtgttgagggaaggtgtaatgtaaaggtgtaatagtgttgagggaaggtataatattgttaagggaaggtgtaatgttaaaggtgtaatagtgttaagggaaggtataatattgttaagggaaggtgtaatgtaaaggtgtaatagtgttgagggaaggt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU216698 True 397 lncRNA 0.37 2 21752505 21752999

Neighbor

gene id symbol gene type direction distance location
LOC103031832 NA coding upstream 52784 21631760 ~ 21699721 (+)
pex11a LOC108431222,LOC107714788,LOC107556261,LOC107690406,LOC107715221,LOC107691149 coding upstream 291126 21457356 ~ 21461379 (+)
LOC103034933 LOC108431189,LOC101061116 coding upstream 380921 21355119 ~ 21371584 (+)
LOC103034607 si:dkeyp-59c12.1,LOC108431221,LOC105905574,LOC107715203 coding upstream 496545 21251704 ~ 21255960 (+)
rgma rgma,LOC107715216,LOC107690376,LOC107715612,LOC107693037 coding upstream 745215 20986624 ~ 21007290 (+)
LOC103025486 fli1,LOC107692484,LOC106612965 coding downstream 247661 22000660 ~ 22061810 (+)
LOC103026111 LOC108434138 coding downstream 324479 22077478 ~ 22079758 (+)
LOC103026427 NA coding downstream 328195 22081194 ~ 22084499 (+)
LOC111194835 NA coding downstream 337564 22090563 ~ 22094253 (+)
LOC103027502 NA coding downstream 452158 22205157 ~ 22233055 (+)
G159868 NA non-coding upstream 243672 21508595 ~ 21508833 (+)
G159864 NA non-coding upstream 260754 21491389 ~ 21491751 (+)
G159836 NA non-coding upstream 309253 21435849 ~ 21443252 (+)
G159790 NA non-coding upstream 545834 21146273 ~ 21206671 (+)
G159781 slco3a1,LOC107690372,LOC107601651,LOC107715617,LOC107693030 non-coding upstream 626409 21089743 ~ 21126096 (+)
G159896 NA non-coding downstream 94618 21847617 ~ 21850541 (+)
G159904 NA non-coding downstream 165750 21918749 ~ 21918994 (+)
G159919 NA non-coding downstream 355076 22108075 ~ 22109190 (+)
G159925 NA non-coding downstream 373545 22126544 ~ 22127679 (+)
G159936 NA non-coding downstream 412922 22165921 ~ 22166376 (+)
fam174b NA other upstream 677932 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 740711 21009302 ~ 21011794 (+)
G159728 NA other upstream 1015456 20736598 ~ 20737049 (+)
G159666 NA other upstream 1565586 20185516 ~ 20186919 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other upstream 3176068 18525528 ~ 18576437 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other downstream 394845 22147844 ~ 22152785 (+)
G160134 NA other downstream 1100413 22853412 ~ 22854081 (+)
G160306 NA other downstream 2366130 24119129 ~ 24119825 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 4570821 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 4864263 26617262 ~ 26755313 (+)

Expression


Co-expression Network