G159919


Basic Information

Item Value
gene id G159919
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 22108075 ~ 22109190 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU216731
GTGCACCTCTCAGGTTGGTATGCTCTATTTTCTGCAGCCAATagttcagtttatttgtttgtttattagaaGTTTTGCACCATCATTGTTTGCACAGTTTgtacacaaaacaaaaacaaacaggtcACGAAGATGTGCTGGCCAACATCAGGATGTTCACTTTAACGTCCGGATGTGGGAACATGTGGCCTGTTGTTATGTATGACATGCAACTGAACTTACAGTGAGgtgaacacaaacacattttacccTGATAAAAGCACTGTCTTCATAATGTATTTTCACACCCTGTGCTGATTTAATGCTTTACGGTAATGATTCTGTTATTTATAGTATCCCAAAACTATGAATCTTATTTCATCCAGAAAATTCCtagtttttttgtggaaatatTGTGCATTGGCATTGCATTTGGTGACTAAAGATTAAGACTACTGGCTTGGGATTTGAGATTTGCCCGTATTGATTTGGGACTTGATTTGAAACTTGCCCATACTGACTTGTGGCTTGACTTAAGACTTCCCCATACTGACTTGGGGCTTGACTTAAGACTTTCTCATATTGATTTGGGACTTGATTTGAAACTTGTCCATACTGACTTGGGGCTTGACTTGAAACTTTCCTGTACTGACTTGGGGCTTGACCTAAAACTTTCCTGTACTGACTTGGGGCTTGACTTAAAACTTTTCCATACTGACTTGGGGCTTGACTCGAAACGTGGTGTGCAGGAATTACTCAACAATTGAGTAACAAATTTCCCTCCAAAACATGAGTCCACTGTTGTTTATGAGTAAAATGATAATATGCCATTACAATGCTTTGgtgtaaacagtaaatataacaatctccattaattaatattttacagaTAAGACAGAAAAATCTCTCAGTTTATAATAAATCCTCCTCCTTCAAGTTCATCAAGTTCTCCATGTCTACGGGTGAGGTCACGTCCTGTTTCATGCTCCGCTGTTTTTCGGTCAGGGGGAGGTTTTTGTCGGGACTGGACAGCTGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU216731 True 1017 lncRNA 0.39 3 22108075 22109190

Neighbor

gene id symbol gene type direction distance location
LOC111194835 NA coding upstream 13822 22090563 ~ 22094253 (+)
LOC103026427 NA coding upstream 23576 22081194 ~ 22084499 (+)
LOC103026111 LOC108434138 coding upstream 28317 22077478 ~ 22079758 (+)
LOC103025486 fli1,LOC107692484,LOC106612965 coding upstream 46265 22000660 ~ 22061810 (+)
LOC103031832 NA coding upstream 408354 21631760 ~ 21699721 (+)
LOC103027502 NA coding downstream 95967 22205157 ~ 22233055 (+)
itpkc itpkc,itpkcb,LOC107596863,LOC107758549 coding downstream 125102 22234292 ~ 22260071 (+)
snrpa snrpa coding downstream 173504 22282694 ~ 22287641 (+)
LOC103028656 LOC108264789,LOC108429874 coding downstream 193164 22302354 ~ 22392575 (+)
rnf7 rnf7,LOC107557824,LOC107713281,LOC107692028 coding downstream 613530 22722720 ~ 22727446 (+)
G159904 NA non-coding upstream 189081 21918749 ~ 21918994 (+)
G159896 NA non-coding upstream 257534 21847617 ~ 21850541 (+)
G159891 NA non-coding upstream 355076 21752505 ~ 21752999 (+)
G159868 NA non-coding upstream 599242 21508595 ~ 21508833 (+)
G159864 NA non-coding upstream 616324 21491389 ~ 21491751 (+)
G159925 NA non-coding downstream 17354 22126544 ~ 22127679 (+)
G159936 NA non-coding downstream 56731 22165921 ~ 22166376 (+)
G159939 NA non-coding downstream 69014 22178204 ~ 22178561 (+)
G159961 cunh19orf54 non-coding downstream 163507 22272697 ~ 22276949 (+)
G160015 NA non-coding downstream 199715 22308905 ~ 22378490 (+)
fam174b NA other upstream 1033502 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 1096281 21009302 ~ 21011794 (+)
G159728 NA other upstream 1371026 20736598 ~ 20737049 (+)
G159666 NA other upstream 1921156 20185516 ~ 20186919 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other upstream 3531638 18525528 ~ 18576437 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other downstream 38654 22147844 ~ 22152785 (+)
G160134 NA other downstream 744222 22853412 ~ 22854081 (+)
G160306 NA other downstream 2009939 24119129 ~ 24119825 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 4214630 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 4508072 26617262 ~ 26755313 (+)

Expression


Co-expression Network