G159926 (LOC108434146,LOC108434147,LOC108434134)


Basic Information

Item Value
gene id G159926
gene name LOC108434146,LOC108434147,LOC108434134
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 22147844 ~ 22152785 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU216738
CTGTGCAGGCGTAGAGTCCTGTCTATCTCTGGAGGCATTGAGGAGTTGGTGAAGGTTAACTGGGAGGTTCTCCTGTGTTTGATTGCAGTGTggattatttgttatttttgtatgtggaaAGGAATTAAATCCTCAGGGAAGGTGGTATATTTCACGGCCACGTTCCCGTATGTGATGCTGCTGGTGTTGCTGGTTCGAGAGTTGACTCTGCCTGGAGCTCTACAGGGAATCGTGTACTACCTCTATCCTGATCCTGAGCGACTGCTGGACCCACAGgtCTGGATGGAGGCAGGTACCCAGGTCTTCTTCTCCTACAGTTCATGTGTGGGTCTATTAACTGTGCTGGGAAGCTGCAACACCTACAATAACAACTGCT

Function

NR:

description
PREDICTED: sodium- and chloride-dependent GABA transporter 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU216738 True 376 TUCP 0.49 3 22147844 22152785

Neighbor

gene id symbol gene type direction distance location
LOC111194835 NA coding upstream 53591 22090563 ~ 22094253 (+)
LOC103026427 NA coding upstream 63345 22081194 ~ 22084499 (+)
LOC103026111 LOC108434138 coding upstream 68086 22077478 ~ 22079758 (+)
LOC103025486 fli1,LOC107692484,LOC106612965 coding upstream 86034 22000660 ~ 22061810 (+)
LOC103031832 NA coding upstream 448123 21631760 ~ 21699721 (+)
LOC103027502 NA coding downstream 52372 22205157 ~ 22233055 (+)
itpkc itpkc,itpkcb,LOC107596863,LOC107758549 coding downstream 81507 22234292 ~ 22260071 (+)
snrpa snrpa coding downstream 129909 22282694 ~ 22287641 (+)
LOC103028656 LOC108264789,LOC108429874 coding downstream 149569 22302354 ~ 22392575 (+)
rnf7 rnf7,LOC107557824,LOC107713281,LOC107692028 coding downstream 569935 22722720 ~ 22727446 (+)
G159925 NA non-coding upstream 20165 22126544 ~ 22127679 (+)
G159919 NA non-coding upstream 38654 22108075 ~ 22109190 (+)
G159904 NA non-coding upstream 228850 21918749 ~ 21918994 (+)
G159896 NA non-coding upstream 297303 21847617 ~ 21850541 (+)
G159891 NA non-coding upstream 394845 21752505 ~ 21752999 (+)
G159936 NA non-coding downstream 13136 22165921 ~ 22166376 (+)
G159939 NA non-coding downstream 25419 22178204 ~ 22178561 (+)
G159961 cunh19orf54 non-coding downstream 119912 22272697 ~ 22276949 (+)
G160015 NA non-coding downstream 156120 22308905 ~ 22378490 (+)
G160051 NA non-coding downstream 407051 22559836 ~ 22561902 (+)
fam174b NA other upstream 1073271 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 1136050 21009302 ~ 21011794 (+)
G159728 NA other upstream 1410795 20736598 ~ 20737049 (+)
G159666 NA other upstream 1960925 20185516 ~ 20186919 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other upstream 3571407 18525528 ~ 18576437 (+)
G160134 NA other downstream 700627 22853412 ~ 22854081 (+)
G160306 NA other downstream 1966344 24119129 ~ 24119825 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 4171035 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 4464477 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 4752459 26905244 ~ 26907627 (+)

Expression


Co-expression Network