G159936


Basic Information

Item Value
gene id G159936
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 22165921 ~ 22166376 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU216758
ATTTCTCAAAACCATAACACCATTTCTTCTCAACAACATCTCAATAACCATTTCATTAACATCATTTCAACATTATTTCTCACCAACAACCATTCTCCGTTTCATCAACATTTCATCATTTCTCATCAACATATATTAACATCAACCATTCTCCGTTTCATCAACATTTCATCATTTCTCATCAACATATATTAACATCAACCATTCTCCATTTCATCAACATTTCTCATCATCAACTATTCTTCATTTCATAAACATTTCTAATTAACAACAACCGTTCtctattttacatcaacaaaaacatctcagtaacaacatttttttttttacaaacatgtATAATATACAAAGGAGCTGCAAACGAGCTTCACTACtgggtggaaaaaataaatgccCGCAAAAGTCTTACAGAGGGAGATTCCTGACCTGGCAGTTCATAGACGACAGTCTGTAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU216758 True 456 lncRNA 0.32 1 22165921 22166376

Neighbor

gene id symbol gene type direction distance location
LOC111194835 NA coding upstream 71668 22090563 ~ 22094253 (+)
LOC103026427 NA coding upstream 81422 22081194 ~ 22084499 (+)
LOC103026111 LOC108434138 coding upstream 86163 22077478 ~ 22079758 (+)
LOC103025486 fli1,LOC107692484,LOC106612965 coding upstream 104111 22000660 ~ 22061810 (+)
LOC103031832 NA coding upstream 466200 21631760 ~ 21699721 (+)
LOC103027502 NA coding downstream 38781 22205157 ~ 22233055 (+)
itpkc itpkc,itpkcb,LOC107596863,LOC107758549 coding downstream 67916 22234292 ~ 22260071 (+)
snrpa snrpa coding downstream 116318 22282694 ~ 22287641 (+)
LOC103028656 LOC108264789,LOC108429874 coding downstream 135978 22302354 ~ 22392575 (+)
rnf7 rnf7,LOC107557824,LOC107713281,LOC107692028 coding downstream 556344 22722720 ~ 22727446 (+)
G159925 NA non-coding upstream 38242 22126544 ~ 22127679 (+)
G159919 NA non-coding upstream 56731 22108075 ~ 22109190 (+)
G159904 NA non-coding upstream 246927 21918749 ~ 21918994 (+)
G159896 NA non-coding upstream 315380 21847617 ~ 21850541 (+)
G159891 NA non-coding upstream 412922 21752505 ~ 21752999 (+)
G159939 NA non-coding downstream 11828 22178204 ~ 22178561 (+)
G159961 cunh19orf54 non-coding downstream 106321 22272697 ~ 22276949 (+)
G160015 NA non-coding downstream 142529 22308905 ~ 22378490 (+)
G160051 NA non-coding downstream 393460 22559836 ~ 22561902 (+)
G160041 NA non-coding downstream 410542 22576918 ~ 22582171 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 13136 22147844 ~ 22152785 (+)
fam174b NA other upstream 1091348 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 1154127 21009302 ~ 21011794 (+)
G159728 NA other upstream 1428872 20736598 ~ 20737049 (+)
G159666 NA other upstream 1979002 20185516 ~ 20186919 (+)
G160134 NA other downstream 687036 22853412 ~ 22854081 (+)
G160306 NA other downstream 1952753 24119129 ~ 24119825 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 4157444 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 4450886 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 4738868 26905244 ~ 26907627 (+)

Expression


Co-expression Network