G159961 (cunh19orf54)


Basic Information

Item Value
gene id G159961
gene name cunh19orf54
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 22272697 ~ 22276949 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU216784
CACAGTACTCTACATGACCACATTTGGTGGCTATATTGGAACAAccaagaaaaacattttatctgGTCTGTCTGGGAGTGAATGTGTATAATAAGTGTAAATAAGTTAGTATAAAAGAGcacaaaaatgtaaagtaaagaagGATACGGAATTAAGACAGGCTGTCCTTCCATCAGATGTTTGAGGATCAGTGCGGAATTGTCTCCAGTCATCCCACCAGATAACCTCTGAACTCTGCAGCCACACACTTCCCCTGCAAGGAGGGCCATATCACCCGCTGAGAACATCTCCCCCTGGGCAGTGTAGCCTTTCTCCAGTGCTGTTTGAATGACTTTCTCCACAGATATTGCATCTGTAGGCCTTAGCAGATGGGTTGCCATCCATAACGCCACTAAaccacatTTAGGGCCATCCTGAATCAATGACGGCACATATTTGTTGCACAGCACCCAGTCAAGATCCTTTCTGAAACTGCCCTCTCTCTGGGCGAGCAGTAACCGGGCCTCCTCAAAGTCTCCCTCCACAGGGGCCTTCCCCTCAGCTATAGCCTGGTACAGCTTCTTCTTACTGGACACAGGGGGAGCCAGAACAGAGGCTGGTGGAGGTGGAAGAGGTGGAGGTGGAAGAGGTGGAGGTGGAAGATCCCCTGACATGGCCTCTTACCGGCTGAAAGTACAAACACAGACCGGTGCTACATTCCAGCGACACACAGCCTAGTCCCAC

Function

NR:

description
PREDICTED: UPF0692 protein C19orf54 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU216784 True 723 lncRNA 0.49 5 22272697 22276949

Neighbor

gene id symbol gene type direction distance location
itpkc itpkc,itpkcb,LOC107596863,LOC107758549 coding upstream 12626 22234292 ~ 22260071 (+)
LOC103027502 NA coding upstream 39642 22205157 ~ 22233055 (+)
LOC111194835 NA coding upstream 178444 22090563 ~ 22094253 (+)
LOC103026427 NA coding upstream 188198 22081194 ~ 22084499 (+)
LOC103026111 LOC108434138 coding upstream 192939 22077478 ~ 22079758 (+)
snrpa snrpa coding downstream 5745 22282694 ~ 22287641 (+)
LOC103028656 LOC108264789,LOC108429874 coding downstream 25405 22302354 ~ 22392575 (+)
rnf7 rnf7,LOC107557824,LOC107713281,LOC107692028 coding downstream 445771 22722720 ~ 22727446 (+)
LOC103026853 LOC108429884 coding downstream 451584 22728533 ~ 22736629 (+)
LOC103027133 fzd9,fzd9b,LOC107563503,LOC107713270,LOC107691950 coding downstream 536586 22813535 ~ 22816398 (+)
G159939 NA non-coding upstream 94136 22178204 ~ 22178561 (+)
G159936 NA non-coding upstream 106321 22165921 ~ 22166376 (+)
G159925 NA non-coding upstream 145018 22126544 ~ 22127679 (+)
G159919 NA non-coding upstream 163507 22108075 ~ 22109190 (+)
G159904 NA non-coding upstream 353703 21918749 ~ 21918994 (+)
G160015 NA non-coding downstream 31956 22308905 ~ 22378490 (+)
G160051 NA non-coding downstream 282887 22559836 ~ 22561902 (+)
G160041 NA non-coding downstream 299969 22576918 ~ 22582171 (+)
LOC111194780 NA non-coding downstream 345397 22622346 ~ 22622773 (+)
LOC111194779 NA non-coding downstream 345890 22622839 ~ 22623307 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 119912 22147844 ~ 22152785 (+)
fam174b NA other upstream 1198124 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 1260903 21009302 ~ 21011794 (+)
G159728 NA other upstream 1535648 20736598 ~ 20737049 (+)
G159666 NA other upstream 2085778 20185516 ~ 20186919 (+)
G160134 NA other downstream 576463 22853412 ~ 22854081 (+)
G160306 NA other downstream 1842180 24119129 ~ 24119825 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 4046871 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 4340313 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 4628295 26905244 ~ 26907627 (+)

Expression


Co-expression Network