G160041


Basic Information

Item Value
gene id G160041
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 22576918 ~ 22582171 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU216895
tAGAGATAAACCCAGCTGAAATAAAGAATCCAAACCAACTGTGGCCTTGGTCCGAGTCCTTCCTAATCGCATCACAGAACACAACGCAAAGTAGCACTGCTGGCCTGCTGGCTGATGAACTTCTTGCTGACAGACGGTGTCTTTCTTGGGAGAGAAGGCGATTTTCCCAACACATGAGGATGCTTCCGACTGGTTGCGATACAGCCGTccttcacaacacaactcagCCGCATTTGAGAGATCCTGCACCTCTGATCCACAGCACtgcagcacacacacgcacacacactttagATTAGCATAGCGGGGAAAAGCAGTCTGGTAGAGCCACCCCTACAGATTATATTACTGTGGCCAAGAGGTTCTGACTGTTTGCTAAAATGTtagtgatttattatttttttaaagaaagaaaagagaaaacaaatcaATTTATAACATTACAAGTACAATGTACAGTTGATATGGCCTATTACAGATTCACAAGAACATACTGAAtttgaaaatgcaaaaaaagtcaTCAAAACTctacaaaaatgcaaagaattgGTTAAACCaataagatttagtttttatgtccataaaaaaaagtaagcacCTTCATAATGCACAATGTTCACAAATGACTCAACAGAACTATTGATTTTACGCAATTAATCGCAACAGCTCTGTAAATCTAAACATacaacatttaattaaacaataaaaaaatagtgagACTTACTTGAGTAACATGGTCAGAGTGATGTTTGGGGTTCCTTTTGCATTTGTCTGGAGAAGCGGAGTCTGCAGTTGAGTATAGACCCAGCGAGCGagtgagcgagggagagagaggaagggaggggACACATTATGCACACCGTTGATGCAAAAAAAACTCACAGAATTCCAAACAGTGTGTTCAGTGATTAGTAGATACTCAACAAAGTCAATTCCCCCATCATACTGTTTAAATTGCAGGAATAACTCTACTGCAGgcccaaacagagagagagagaagagagagagagacatacacagagaacaggagagagagggagagggatacagaaaatgaGAGTGAGAAAGACATAGGCAAAGGATAGGAGAGAGACATatacagagaatgagagagagagagagagagagagagagaggaagacagagagagacatataCAGAGactaagagaaaaaaacagagagggagagagaaagaaatatgcATAGAATGGGAAAAAGGAGATACAGAGACAtaaacagagagacacacagagaatatgagaaagaagtagagagagagagaaagagagagagagaaatatgcaTAGaatggaaaagagagagatacagagaataGGAGAGACAGACATACATAGAGAAACAgtgaataagagaaagagagctaaGAGAGACATACAAAGAGAATATGATTCAGAaaaagagatacagacagagagagagagaaagagagagagagatgacagctttgcacatgaAGGGACTATGATTGGAAAAATATGCTGAGTGAATGCCAAAGAAGGGAAAGACTGCTACTAAAGAATGTAAAGTATAAAATGTGCATGTATGTTCCTTTATCATTTACACAGTTCATTTTAATctataatgcagaaaaaataatcatatagAAAATCATTAAATGAGAAAGATTTTTGACCGTTCAGTTTAATACATGCCAGACATTCGAGAGCCGTGAGTGTGGAGGTATGAAGAACTACCGGAGTGCAGCACTGGGAAACTGTCATCACCTACCCGACACTTCCTGCCAGAACTGCGGGacacacagttccactgctctacagctcagtGTCGAGGGCTTTACACTCTTCCCTCTATAGCCCAGGCCTCACGTCAGTTTATGTTACTGTGTGTCTAATAATCTATTAAATTTTACCGAAACAAACTGGATGAACTGGCACACTTTATATGTCAGCATTCTACAATCTACAATCTGAGTAAATGCTTATATATTTCTGCAACTCAACAATTCAAAAGGAGCTAGAGTTATGTTGTGTTCCATCCGATTCCTGATATCTGAATTATCAAGTTCCAGCCTAAGTAACCCCAAGTTTAGAATCCAAGATTATTTATAGTATTATAGAGTTTATTATCACTTCTTTCTATTGGTGTCACAATAAATCATTCATTCACACAgtaaatgtgcactctctccgcaaAGTAACTTCTATTTGTGGACAAGTTTCCATGCTGTTTGGAcgttaaaaatacagtataatgagTCATTCTTAAGTGGAATTGCTAATAATGCTAACCTGCGacatatttttactgaattcacCATAAAACACTGGTAAATAATTGTCAGTTTTGgtaaactcaaactcaaagcCTTTAACCTTTTTTGAGATTTTGAAAGATTGTACAACTAACAAAATGTTTAACTGAAACGGCGTCAGCTCAAGTTATACAAGCCATTGGTTTATTTTCTGTCAAGACCAACTTACAGCTGGTAaatagcaatggaaataaactgagtcTTCCTTCCTAAGTCTTccctttttctttaattagtgaaattgcaaataaaactaGTTTGTGATGAGAACTGTTttgtacactttttaaagattcttggaaactggagaaaactggtataGGAAggggtctggctgacccacatggcaatgTCTTTAACTTAGCTTAACATTGGACTGAGTTTCAGATTATACAGTAAAACTTTGTCTGGGCTTTGTGATACTGCTATGCTATGGACTGCTAACAGCGCCCTTTTTCAAGCAAAGTATGAAAGTGTGTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU216895 True 2776 lncRNA 0.38 3 22576918 22582171

Neighbor

gene id symbol gene type direction distance location
LOC103028656 LOC108264789,LOC108429874 coding upstream 184343 22302354 ~ 22392575 (+)
snrpa snrpa coding upstream 289277 22282694 ~ 22287641 (+)
itpkc itpkc,itpkcb,LOC107596863,LOC107758549 coding upstream 316847 22234292 ~ 22260071 (+)
LOC103027502 NA coding upstream 343863 22205157 ~ 22233055 (+)
LOC111194835 NA coding upstream 482665 22090563 ~ 22094253 (+)
rnf7 rnf7,LOC107557824,LOC107713281,LOC107692028 coding downstream 140549 22722720 ~ 22727446 (+)
LOC103026853 LOC108429884 coding downstream 146362 22728533 ~ 22736629 (+)
LOC103027133 fzd9,fzd9b,LOC107563503,LOC107713270,LOC107691950 coding downstream 231364 22813535 ~ 22816398 (+)
LOC103027426 LOC103027426 coding downstream 310301 22892472 ~ 22893301 (+)
LOC103030816 NA coding downstream 478404 23060575 ~ 23094876 (+)
G160051 NA non-coding upstream 15016 22559836 ~ 22561902 (+)
G160015 NA non-coding upstream 198428 22308905 ~ 22378490 (+)
G159961 cunh19orf54 non-coding upstream 299969 22272697 ~ 22276949 (+)
G159939 NA non-coding upstream 398357 22178204 ~ 22178561 (+)
G159936 NA non-coding upstream 410542 22165921 ~ 22166376 (+)
LOC111194780 NA non-coding downstream 40175 22622346 ~ 22622773 (+)
LOC111194779 NA non-coding downstream 40668 22622839 ~ 22623307 (+)
G160096 NA non-coding downstream 66465 22648636 ~ 22648919 (+)
G160098 NA non-coding downstream 67660 22649831 ~ 22650066 (+)
G160106 NA non-coding downstream 87945 22670116 ~ 22672904 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 424133 22147844 ~ 22152785 (+)
fam174b NA other upstream 1502345 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 1565124 21009302 ~ 21011794 (+)
G159728 NA other upstream 1839869 20736598 ~ 20737049 (+)
G159666 NA other upstream 2389999 20185516 ~ 20186919 (+)
G160134 NA other downstream 271241 22853412 ~ 22854081 (+)
G160306 NA other downstream 1536958 24119129 ~ 24119825 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 3741649 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 4035091 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 4323073 26905244 ~ 26907627 (+)

Expression


Co-expression Network