G160051


Basic Information

Item Value
gene id G160051
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 22559836 ~ 22561902 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU216905
AGTTGAGCTTGACATCAGAAACACTGGTCTCATCAAGTTCTAAGCTTTAGTTTAGCATATAAAACATCACATACCTCAAAAAAACTCCTTAGATCCATCTAGAAAGTAGTTCGATACATTTAGCATAGCATAAAAAAACTACCACTTCCCAAATAGCTAGATAGTGTTATAATAAATGTCGTATGATGATAGTCTTAttcaaaactaaaataaaaaagacctgAATTCAAAGGGTTTTTTTACATTCTATTGAAGCTAAAAGCTAGCCTCATTTCTAGATTTCACAGAATTTTAATTCCAGGTCATATACCTTCTCACAGAACCAGTATGATACAGCCAGTTACAGTGGGGAGCTGCATATCAAGCCATCAAAATTCCTGATAGTTCAACAGTGGACTTGATGATATACTGGCTTGACGTATACTGGCTCCTACTCTGAGTAATCAGAGGATTTAAGGTGCTTGAAAACATTCAGCATTAACATCATctcataaaaatttaaaaaagataaaaaagtcaaacaGAGATAAATTACAgtgttgtattatatatttttttattttatttaattgttttagagCTACTGTAAACCACTGTAATATgcaccagcctcagaaaactACAACACAAGCAGAACGTGTACAGTACTATTCATGAtggttataataataaaaacaaaaaaaaattaaggtgaCAGAAAGAATTCTTTTGATCACAATGCGATAGAAGAAGCACATTCACCTTCCTGCAAGCATTCAGTGGATGGTAATAGGGAAGCGACATATTGGAACTACTGTAAAAAGTGCACTTGAAGGAACAAGGTATATACAGTGGGGAATGTAATTATATGAAACACTGTGGATTTCGCAAGTTTTCCCACCTACAAAGAATGAAAAgatctgtaatttttttattgtaggtaCACTTCAACTGTGAGAGACACAAtctaaaaatcaagaaaatcacttcgtatgatttaaaaaaataataatttgaatttTACTgcatgaaataatgaaatacgAATTTGATCACCAACCAGCAAGTTCTGGCTCTTATAGActtgttagtttttttctttaagaagctttttattctatttatacAAGCTGACTGTCAATCTTGCTCAAGATCTCTCCTCATGGGGTAAGAATCAGCCCAGAAATATGTGGGAGGACCTGGTTAATGACCTGAAGAGAGCTGGGATCACGGTCTCAAAGATTACTATTTGTAACACACTATGTTGTCATTAAAATTTTGTAGGGCTCACAATGTCTCGGCCCGGTTAAAGTTCGCCAATGACCATCTGGATGATCCAGAGGAGGCATGGGAGTAGGTCATGtgatcagatgagaccaaaaaagaaaaaaaaaagcttcttggTATTAACTTCATCTGCCTGCTGTGTTGTATGGTGTGCAACTACACCATATTGAAGGGAGGATTGATGGGGTCATGTATCGCAAGATTTTGGTCAGCAACctcctttttttaatcattaagagcattaaagATAGGttgtggctgggtcttccagcatgacaatgaccccaaacacacagcCAGTGCAACTAAAACAGTGGCTCCATAAGATGCATTTCAAGATTCAGTCTTTAGACCTGAAACCAATAAAAAGTCTTTGGATGTGCTAAAAGGAGGAGCTGAAACTCAAAGTTGCCCAGCGACAGCCCGAAACCTGAAAGATCTGCAGAAGCACTGTATGGGGGAATGTGTCAAACTgcctgctgcagtgtgtgcaaaCTTAGTCGAGAACCATAGGAAACATATATACAACTCTGTAATGTAGAAAAACTGCAAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU216905 True 1821 lncRNA 0.36 3 22559836 22561902

Neighbor

gene id symbol gene type direction distance location
LOC103028656 LOC108264789,LOC108429874 coding upstream 167261 22302354 ~ 22392575 (+)
snrpa snrpa coding upstream 272195 22282694 ~ 22287641 (+)
itpkc itpkc,itpkcb,LOC107596863,LOC107758549 coding upstream 299765 22234292 ~ 22260071 (+)
LOC103027502 NA coding upstream 326781 22205157 ~ 22233055 (+)
LOC111194835 NA coding upstream 465583 22090563 ~ 22094253 (+)
rnf7 rnf7,LOC107557824,LOC107713281,LOC107692028 coding downstream 160818 22722720 ~ 22727446 (+)
LOC103026853 LOC108429884 coding downstream 166631 22728533 ~ 22736629 (+)
LOC103027133 fzd9,fzd9b,LOC107563503,LOC107713270,LOC107691950 coding downstream 251633 22813535 ~ 22816398 (+)
LOC103027426 LOC103027426 coding downstream 330570 22892472 ~ 22893301 (+)
LOC103030816 NA coding downstream 498673 23060575 ~ 23094876 (+)
G160015 NA non-coding upstream 181346 22308905 ~ 22378490 (+)
G159961 cunh19orf54 non-coding upstream 282887 22272697 ~ 22276949 (+)
G159939 NA non-coding upstream 381275 22178204 ~ 22178561 (+)
G159936 NA non-coding upstream 393460 22165921 ~ 22166376 (+)
G159925 NA non-coding upstream 432157 22126544 ~ 22127679 (+)
G160041 NA non-coding downstream 15016 22576918 ~ 22582171 (+)
LOC111194780 NA non-coding downstream 60444 22622346 ~ 22622773 (+)
LOC111194779 NA non-coding downstream 60937 22622839 ~ 22623307 (+)
G160096 NA non-coding downstream 86734 22648636 ~ 22648919 (+)
G160098 NA non-coding downstream 87929 22649831 ~ 22650066 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 407051 22147844 ~ 22152785 (+)
fam174b NA other upstream 1485263 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 1548042 21009302 ~ 21011794 (+)
G159728 NA other upstream 1822787 20736598 ~ 20737049 (+)
G159666 NA other upstream 2372917 20185516 ~ 20186919 (+)
G160134 NA other downstream 291510 22853412 ~ 22854081 (+)
G160306 NA other downstream 1557227 24119129 ~ 24119825 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 3761918 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 4055360 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 4343342 26905244 ~ 26907627 (+)

Expression


Co-expression Network