G160106


Basic Information

Item Value
gene id G160106
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 22670116 ~ 22672904 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU216981
tacctttgttgaatagccaagctccattctcccacagctttccgagatccagcaattttgtgcTGTTCGtccaaacaggctttagaatgagTGAAACAGGGTATGTTTACCCCTGCAGATTaacctctttttacactgtttatccaggctcaaattagctccacacctcattagTAGAAACCAGAGAGCACTGGCATTTGAAACTAGGggttttaagaaattaaaagtgcacaagaagtatattaaaaaattctTGATCACGTCTTCATTTTAAGATGATGGTGCCCGGAGATTCAGCTATGTtacgggttgtaaacagtgttttttaataaacttcttgtgcacttttaaatttCTTAAAGCCTCGTTTTCAAATGCCATTGGCTCTTTGGTTCTACCAGTGGGAGTGGAGtggagcctggataacagtgtaaaaagcgatttatctacAGGGTAAAATATGCCCTGTATCACccattctaaagcctgtttggaaaacagcacaaaattgctggatctcagaaatctgcgggagaacggaggtgggctattcaacaaaggttagtactcattataatgttttactacacccaaagtcaatttcacaccgaagttctcctttaacacagTTTGATAAGTGTCAATTATCAACTTTATCAACTTGTATCAAGTTTTGATGTGTCTTCAAAAGTTAATTTGTTCacaagtaTATAGCAGGTATTGTTCAATGCTGTGCATATGTTTGGGATATTTGGGAAATGTTCATCAATATGTGTTCTACAATTCAGCGTGGAGACACATTTCCTCAGGACTGCATATTAGTGTTAAATAGTGTTGTACACTATTTAGTGTACACTATTTGAGGGAGAACTCTGGTTTGAAACTTTGAAAACTTTGAAACTCTGGTTTAAGACTTTGGGTGTAGTGAAGCATGATTACgtgtactaacctttgttgaatagcccacctttgTTCACTCCCAGCATTCTGAAAGTTTCtccaaacaggctttagaatggACGCTAGAGAGCATGTTGTTGCTCCTGCAGATACATCGCTTTTTACATCGTTTACAAACTCAAATTAGCTCCAAACCTCATTCTTTTTAATTGACCGTTTACATTGCGTAGCATAAGCTAAttctgtttggacaaactgcatattttttttttttaatctgcagGGGCAACCACATGCCCTCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU216981 True 1203 lncRNA 0.38 2 22670116 22672904

Neighbor

gene id symbol gene type direction distance location
LOC103028656 LOC108264789,LOC108429874 coding upstream 277541 22302354 ~ 22392575 (+)
snrpa snrpa coding upstream 382475 22282694 ~ 22287641 (+)
itpkc itpkc,itpkcb,LOC107596863,LOC107758549 coding upstream 410045 22234292 ~ 22260071 (+)
LOC103027502 NA coding upstream 437061 22205157 ~ 22233055 (+)
LOC111194835 NA coding upstream 575863 22090563 ~ 22094253 (+)
rnf7 rnf7,LOC107557824,LOC107713281,LOC107692028 coding downstream 49816 22722720 ~ 22727446 (+)
LOC103026853 LOC108429884 coding downstream 55629 22728533 ~ 22736629 (+)
LOC103027133 fzd9,fzd9b,LOC107563503,LOC107713270,LOC107691950 coding downstream 140631 22813535 ~ 22816398 (+)
LOC103027426 LOC103027426 coding downstream 219568 22892472 ~ 22893301 (+)
LOC103030816 NA coding downstream 387671 23060575 ~ 23094876 (+)
G160098 NA non-coding upstream 20050 22649831 ~ 22650066 (+)
G160096 NA non-coding upstream 21197 22648636 ~ 22648919 (+)
LOC111194779 NA non-coding upstream 46809 22622839 ~ 22623307 (+)
LOC111194780 NA non-coding upstream 47343 22622346 ~ 22622773 (+)
G160041 NA non-coding upstream 87945 22576918 ~ 22582171 (+)
G160115 NA non-coding downstream 48304 22721208 ~ 22721760 (+)
G160129 NA non-coding downstream 72453 22745357 ~ 22746298 (+)
G160144 NA non-coding downstream 174487 22847391 ~ 22847763 (+)
G160137 baz1b non-coding downstream 184188 22857092 ~ 22860616 (+)
G160142 selenot,selt1b,LOC108429894,LOC108264179,LOC107557827,LOC107710848,LOC107684611 non-coding downstream 222151 22895055 ~ 22899397 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 517331 22147844 ~ 22152785 (+)
fam174b NA other upstream 1595543 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 1658322 21009302 ~ 21011794 (+)
G159728 NA other upstream 1933067 20736598 ~ 20737049 (+)
G159666 NA other upstream 2483197 20185516 ~ 20186919 (+)
G160134 NA other downstream 180508 22853412 ~ 22854081 (+)
G160306 NA other downstream 1446225 24119129 ~ 24119825 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 3650916 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 3944358 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 4232340 26905244 ~ 26907627 (+)

Expression


Co-expression Network