G160115


Basic Information

Item Value
gene id G160115
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 22721208 ~ 22721760 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU216991
TCGCACGTCGAAATTCGAAGTCAGACCAACGTTGGTCTGTTGTTGGCAGTATTTTTTAGAACGCTGGATAAAGGAGCTGGATAAAGGAGCGGAGATCGGCGTCAAAATGCCAACGTTTTACCAACGTCAGCTCCACGTTGGTCTTTAGCTTATTACCAAACAGCCCAAATTCTCACACACGAATATTGGAGCATGGCTGGAACATGGCAATTGTGCGTGCGCTCGCGCGTTCAcgggaaacaaacaaaaacccacagacagacacatagggcacagaacacaaacacacacacacacagcagccacGGTCCAGTCGTGCTCCAAAACTGGTGCGCGCATTTGTTTGGGTAGATGTGGATAGGTGTGTACAGAACGCTACACCTTACACTGGGTAGCGACTTGAACCCTAGTTTGGGCACAACCTACAAACCAACGTGGAGCTGACATTGGAAAAACGTTGGCATTTTGACGACGATCTCGTGCAGGGCctgaaattcagtttttttttaataagagaccacttcagttactAAACCATTTTCTtggattttgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU216991 True 553 lncRNA 0.47 1 22721208 22721760

Neighbor

gene id symbol gene type direction distance location
LOC103028656 LOC108264789,LOC108429874 coding upstream 328633 22302354 ~ 22392575 (+)
snrpa snrpa coding upstream 433567 22282694 ~ 22287641 (+)
itpkc itpkc,itpkcb,LOC107596863,LOC107758549 coding upstream 461137 22234292 ~ 22260071 (+)
LOC103027502 NA coding upstream 488153 22205157 ~ 22233055 (+)
LOC111194835 NA coding upstream 626955 22090563 ~ 22094253 (+)
rnf7 rnf7,LOC107557824,LOC107713281,LOC107692028 coding downstream 960 22722720 ~ 22727446 (+)
LOC103026853 LOC108429884 coding downstream 6773 22728533 ~ 22736629 (+)
LOC103027133 fzd9,fzd9b,LOC107563503,LOC107713270,LOC107691950 coding downstream 91775 22813535 ~ 22816398 (+)
LOC103027426 LOC103027426 coding downstream 170712 22892472 ~ 22893301 (+)
LOC103030816 NA coding downstream 338815 23060575 ~ 23094876 (+)
G160106 NA non-coding upstream 48304 22670116 ~ 22672904 (+)
G160098 NA non-coding upstream 71142 22649831 ~ 22650066 (+)
G160096 NA non-coding upstream 72289 22648636 ~ 22648919 (+)
LOC111194779 NA non-coding upstream 97901 22622839 ~ 22623307 (+)
LOC111194780 NA non-coding upstream 98435 22622346 ~ 22622773 (+)
G160129 NA non-coding downstream 23597 22745357 ~ 22746298 (+)
G160144 NA non-coding downstream 125631 22847391 ~ 22847763 (+)
G160137 baz1b non-coding downstream 135332 22857092 ~ 22860616 (+)
G160142 selenot,selt1b,LOC108429894,LOC108264179,LOC107557827,LOC107710848,LOC107684611 non-coding downstream 173295 22895055 ~ 22899397 (+)
G160160 NA non-coding downstream 189799 22911559 ~ 22948189 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 568423 22147844 ~ 22152785 (+)
fam174b NA other upstream 1646635 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 1709414 21009302 ~ 21011794 (+)
G159728 NA other upstream 1984159 20736598 ~ 20737049 (+)
G159666 NA other upstream 2534289 20185516 ~ 20186919 (+)
G160134 NA other downstream 131652 22853412 ~ 22854081 (+)
G160306 NA other downstream 1397369 24119129 ~ 24119825 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 3602060 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 3895502 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 4183484 26905244 ~ 26907627 (+)

Expression


Co-expression Network