G160137 (baz1b)


Basic Information

Item Value
gene id G160137
gene name baz1b
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 22857092 ~ 22860616 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU217017
GTATTACACCACCTGTACCACACACACGACCAATTCCCCAGATACTTACCCGCGCCTCAAACTCCGCCGTGTCCTCCATGCAGCCTAGTCCACCCTTCTCCAGGCGAGAGGCCACCTCAATAATATCACTGCGCAGAAATTTAAGGAGCTCCTGGTGGCCGTCACATGCCCGCAGGCCCAGGTTACCCTTCTTACTCATATGaatggagtgcattatgtccTGGAACTTGACTTCCAGCTTGAGTTTTAATTCGCTCTCTCGCACGCCCTGCGAGTGAAGACTTTCTAAAAGCTCCTCCAAGTCTTTCGGAGAGTCACACACAAACCAGAGATTCTGGCCCTGCTTCGGCACAGTGGACTCTATGTAGTTCTCAGGAGCTGACATCCACCGCTGGCCGTTCTCATTAGTGGCACTGGCAATGCTTCCCTCATCATCTTTGTCTACatCTTCTGCATCCTCTTCTTTCTTGATCTCTTCCTCattttcctcttcctcctcctccttagGTGCTTCAGGctggggaggaagagtgaagctGTAATCGATGCTCTCGTGTACCCAGCCTTTCTCTATATACAGCCCAGGAACCACATCAGAGAACAGCCagtacCGGTTGTGGTTGCGGTCAGTGCCTAGGGGCGTTCTCCTCATCACCAGCTTGGCTTTAGCAATGCCTTCCTGGAAGGCTTTCTCTGCTGCAACCTTCTGCTTCCGCAGTCGCTCTTCCTCAGCCTCCTTCTCCATGCGCTCCTTATTCTGTCGCTCCTGTTCCTCCTTTTCCTTCTTGGCCTGCATGGACATCAGCCTGCGGCTCTTCACCGTGCTGATCATGTCCTCCGGCTCTTGAGAGGCCTTCACCTGCTCCTTCTTGGTGTTcccctccttcttcttctctgccttggCTCCCGCTTCCTCTGCCTTGGGGGCGATGCATCCTGACGCAATCATTTGCTCCTTGAGCTTCTGTTTCTCAGCCTTCCGCCGGATGTTGGCCTCCTTGAGCGTGGCGAGACGTTCCCTCCAGAGCCCGGCTGCACGCTGCTGCATGTCTTCCACATGGTCCTCCACTGAGTAGGTCATGAGTATGCGATGGCAGAGTGCCACCAGCAGGCTCACCTTCTCTTGTGGGGTGAGCTCAAACACCTCAGCTGTCTCAAGGCGTTCCAGAAACTCGCTGCTGACCACATCGTCGTAGCTGCCACCTCCGGACCACTCATCTGAGCTGTGGGAGCTTTCGTCGCATTGAGCGTCCGATGGCCTCAGGCACAGGCGCACCAGTTCTGACACAGAGTGCATGGTCAGCGGGATCTCAGAGAGAGGCATGTCTAGTTCACTGTAGGCTTCTGCCAGCTCGTCCTGAAGCAGCGTCTGGAGGAGCACCACCAGGACACGGTTCAGGTAGTTGAAGCCACCCTTGTCTGAGGCCAGCGCCTCAACTAAGGCCTGAGCCGTGATTGGGTACTGGTCATCAGGCATGAGAAGATCAGAATAGCAGCTGAGGAAGTCCGTCACCATTGCTATGTCACCGAACAGTGCATTGGGCAGGCCCTCGGGCATGTCCACCAATCGGAAAGCAGGCAGGCTCTTGCCCTCAATCTCCTGATCTTCGTAGCGTCGCTGCTGCTCACGCCGAAGCAGCATCTCCTTCTCGCGTCGCTCTTTAGCCTTCTCACGCAGCTTTGCTTTCAGTTCTGCTCGCTTCTTTTTTAATACCTCCTGCTTTTCCTCTTCACTCATAAGTGCCCACCGTCGTTTCTCCTCCAGGCGCTCCCAGCGCTTCTGGACTATCTCCTTCAGCTCCTCTGGGAGGCGTCCACGGTCCTCTGGCGTCAGAGTCTTTGCCGCCCTGGACACCAGTGCAGACAGAGCGTTCTTCTTGTCCTCCTTGCCCTTGTTCTCCTTATAAAAGCGGAGAAGGTGCAGAGCCATGGGTGGCAGAGGTTTGCCCAGTTTCGGGGTGCCAAGCCCTGTGCTCCGTGCTCTCTTTTTGGGGCTGTCTTTAGCAGAGGGACTTTTTGCCAGATCGAGCAGTGTCATCTGCTTCATCCTGGGTTTCTTGGGgcctttttcatcttttttagaTCCTTTCTGGCTGTTCGGTGGCCTCCCTGCACCGCTCTTGCGCCCCCTCTTGGGATCGACAAACTTCTTGCCGTCTGATTTTCTAGGCGTGCCTGAATTTTTCATCTTCAGTGGAGAGCCATTTACTTTC

Function

symbol description
baz1b Predicted to enable histone kinase activity and protein tyrosine kinase activity. Predicted to be involved in cellular response to DNA damage stimulus and histone phosphorylation. Predicted to act upstream of or within chromatin remodeling and phosphorylation. Predicted to be located in nucleus. Orthologous to human BAZ1B (bromodomain adjacent to zinc finger domain 1B).

NR:

description
PREDICTED: tyrosine-protein kinase BAZ1B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU217017 True 2213 lncRNA 0.55 6 22857092 22860616

Neighbor

gene id symbol gene type direction distance location
LOC103027133 fzd9,fzd9b,LOC107563503,LOC107713270,LOC107691950 coding upstream 40694 22813535 ~ 22816398 (+)
LOC103026853 LOC108429884 coding upstream 120463 22728533 ~ 22736629 (+)
rnf7 rnf7,LOC107557824,LOC107713281,LOC107692028 coding upstream 129646 22722720 ~ 22727446 (+)
LOC103028656 LOC108264789,LOC108429874 coding upstream 464517 22302354 ~ 22392575 (+)
snrpa snrpa coding upstream 569451 22282694 ~ 22287641 (+)
LOC103027426 LOC103027426 coding downstream 31856 22892472 ~ 22893301 (+)
LOC103030816 NA coding downstream 199959 23060575 ~ 23094876 (+)
LOC103026225 cntn5,LOC107691883 coding downstream 517253 23377869 ~ 23673136 (+)
LOC103025495 LOC108429891 coding downstream 887126 23747742 ~ 23913263 (+)
LOC103024981 NA coding downstream 1083077 23943693 ~ 23949888 (+)
G160144 NA non-coding upstream 9329 22847391 ~ 22847763 (+)
G160129 NA non-coding upstream 110794 22745357 ~ 22746298 (+)
G160115 NA non-coding upstream 135332 22721208 ~ 22721760 (+)
G160106 NA non-coding upstream 184188 22670116 ~ 22672904 (+)
G160098 NA non-coding upstream 207026 22649831 ~ 22650066 (+)
G160142 selenot,selt1b,LOC108429894,LOC108264179,LOC107557827,LOC107710848,LOC107684611 non-coding downstream 34439 22895055 ~ 22899397 (+)
G160160 NA non-coding downstream 50943 22911559 ~ 22948189 (+)
G160168 NA non-coding downstream 104717 22965333 ~ 22966591 (+)
G160212 NA non-coding downstream 366798 23227414 ~ 23227734 (+)
G160214 NA non-coding downstream 378115 23238731 ~ 23239091 (+)
G160134 NA other upstream 3011 22853412 ~ 22854081 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 704307 22147844 ~ 22152785 (+)
fam174b NA other upstream 1782519 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 1845298 21009302 ~ 21011794 (+)
G159728 NA other upstream 2120043 20736598 ~ 20737049 (+)
G160306 NA other downstream 1258513 24119129 ~ 24119825 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 3463204 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 3756646 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 4044628 26905244 ~ 26907627 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other downstream 4249055 27109671 ~ 27119264 (+)

Expression


Co-expression Network