G160144



Basic Information


Item Value
gene id G160144
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 22847391 ~ 22847763 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU217025
ctttttattAACAAGATCCTGTTTACACTTGGTAAAAGTATctggattatatctggataaggccaagccacaaaaaaatggtaaaaaagtgTACAGGCATTCAAGgctaatttaaaacaaacaaaaatccaATCTCTCACTCAAACCTCCTCAGAATTTGGTTTTAGGTGCATTTTAGCCACATTATAGTGTAAGTGTAAACACCCTTCTCTCAATACAACAACTAAAAATCCTTGCATTACAATCAGAACCTTGTATTACAACCGAAACACCAGTAATAATTGCATTATTTATCCCATGCAGTAAtaagatttttgttttagtgttaTATACATGTGGCTAAAATCTAATCAGGACACAATTCAGATACTAA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU217025 True 373 lncRNA 0.32 1 22847391 22847763
Loading

Neighbor


gene id symbol gene type direction distance location
LOC103027133 fzd9,fzd9b,LOC107563503,LOC107713270,LOC107691950 coding upstream 30993 22813535 ~ 22816398 (+)
LOC103026853 LOC108429884 coding upstream 110762 22728533 ~ 22736629 (+)
rnf7 rnf7,LOC107557824,LOC107713281,LOC107692028 coding upstream 119945 22722720 ~ 22727446 (+)
LOC103028656 LOC108264789,LOC108429874 coding upstream 454816 22302354 ~ 22392575 (+)
snrpa snrpa coding upstream 559750 22282694 ~ 22287641 (+)
LOC103027426 LOC103027426 coding downstream 44709 22892472 ~ 22893301 (+)
LOC103030816 NA coding downstream 212812 23060575 ~ 23094876 (+)
LOC103026225 cntn5,LOC107691883 coding downstream 530106 23377869 ~ 23673136 (+)
LOC103025495 LOC108429891 coding downstream 899979 23747742 ~ 23913263 (+)
LOC103024981 NA coding downstream 1095930 23943693 ~ 23949888 (+)
G160129 NA non-coding upstream 101093 22745357 ~ 22746298 (+)
G160115 NA non-coding upstream 125631 22721208 ~ 22721760 (+)
G160106 NA non-coding upstream 174487 22670116 ~ 22672904 (+)
G160098 NA non-coding upstream 197325 22649831 ~ 22650066 (+)
G160096 NA non-coding upstream 198472 22648636 ~ 22648919 (+)
G160137 baz1b non-coding downstream 9329 22857092 ~ 22860616 (+)
G160142 selenot,selt1b,LOC108429894,LOC108264179,LOC107557827,LOC107710848,LOC107684611 non-coding downstream 47292 22895055 ~ 22899397 (+)
G160160 NA non-coding downstream 63796 22911559 ~ 22948189 (+)
G160168 NA non-coding downstream 117570 22965333 ~ 22966591 (+)
G160212 NA non-coding downstream 379651 23227414 ~ 23227734 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 694606 22147844 ~ 22152785 (+)
fam174b NA other upstream 1772818 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 1835597 21009302 ~ 21011794 (+)
G159728 NA other upstream 2110342 20736598 ~ 20737049 (+)
G159666 NA other upstream 2660472 20185516 ~ 20186919 (+)
G160134 NA other downstream 5649 22853412 ~ 22854081 (+)
G160306 NA other downstream 1271366 24119129 ~ 24119825 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 3476057 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 3769499 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 4057481 26905244 ~ 26907627 (+)

Expression


G160144 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
End of interactive chart.

G160144 Expression in each Bioproject

Bar chart with 4 bars.
G160144 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.

Co-expression Network