G160168


Basic Information

Item Value
gene id G160168
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 22965333 ~ 22966591 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU217052
AGGGGTGGGTATCATCACTGATTTCCcagttcgattcgattccgattcacAAGGTCTCGATTCGATTTTCAAATCGAttttcgattcgattcgattctcgattcaACATCGATTAATTTAGGGAAATTTCAGTTACCataaaaattgtagtttgaatatgaaatgtaattatacaaggaacactcaaatttcattattaaaatattagtttatattatGAACACTCAACAAAATGCAACCACACGTCTGCCTTCAGGTTCTTGGGCGCCTGCACTCCTGCTTCAGCCATGCTTAACTGATCACCCCAGCCAGAGCGCGCTGCTCGGAAAAAAAGGATGGTCTCGCGAGATCTACGCGAGACGTTAAAGCTACGCATACACGGGGAAAAGGGGCTAGTTATAAAGATCGATCTCGGGTTTATATAAATCGATATCGGATCATTCAAATGAggatcgatttaaatcgaataatcgatttttttaacacacccCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU217052 True 493 lncRNA 0.39 2 22965333 22966591

Neighbor

gene id symbol gene type direction distance location
LOC103027426 LOC103027426 coding upstream 72032 22892472 ~ 22893301 (+)
LOC103027133 fzd9,fzd9b,LOC107563503,LOC107713270,LOC107691950 coding upstream 148935 22813535 ~ 22816398 (+)
LOC103026853 LOC108429884 coding upstream 228704 22728533 ~ 22736629 (+)
rnf7 rnf7,LOC107557824,LOC107713281,LOC107692028 coding upstream 237887 22722720 ~ 22727446 (+)
LOC103028656 LOC108264789,LOC108429874 coding upstream 572758 22302354 ~ 22392575 (+)
LOC103030816 NA coding downstream 93984 23060575 ~ 23094876 (+)
LOC103026225 cntn5,LOC107691883 coding downstream 411278 23377869 ~ 23673136 (+)
LOC103025495 LOC108429891 coding downstream 781151 23747742 ~ 23913263 (+)
LOC103024981 NA coding downstream 977102 23943693 ~ 23949888 (+)
nectin1 nectin1,LOC107758086,LOC107670612,LOC107563312,LOC102782356,LOC107691861 coding downstream 1253268 24219859 ~ 24614929 (+)
G160160 NA non-coding upstream 17144 22911559 ~ 22948189 (+)
G160142 selenot,selt1b,LOC108429894,LOC108264179,LOC107557827,LOC107710848,LOC107684611 non-coding upstream 65936 22895055 ~ 22899397 (+)
G160137 baz1b non-coding upstream 104717 22857092 ~ 22860616 (+)
G160144 NA non-coding upstream 117570 22847391 ~ 22847763 (+)
G160129 NA non-coding upstream 219035 22745357 ~ 22746298 (+)
G160212 NA non-coding downstream 260823 23227414 ~ 23227734 (+)
G160214 NA non-coding downstream 272140 23238731 ~ 23239091 (+)
G160216 NA non-coding downstream 285486 23252077 ~ 23252817 (+)
G160253 NA non-coding downstream 895352 23861943 ~ 23915300 (+)
G160308 NA non-coding downstream 1153288 24119879 ~ 24120092 (+)
G160134 NA other upstream 111252 22853412 ~ 22854081 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 812548 22147844 ~ 22152785 (+)
fam174b NA other upstream 1890760 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 1953539 21009302 ~ 21011794 (+)
G159728 NA other upstream 2228284 20736598 ~ 20737049 (+)
G160306 NA other downstream 1152538 24119129 ~ 24119825 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 3357229 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 3650671 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 3938653 26905244 ~ 26907627 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other downstream 4143080 27109671 ~ 27119264 (+)

Expression


Co-expression Network