CI01000012_10260457_10272063 (NT5C2B, NT5C2, NT5C2A)


Basic Information

Item Value
gene id CI01000012_10260457_10272063
gene name NT5C2B, NT5C2, NT5C2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 10259735 ~ 10272262 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_10260457_10272063.mRNA
ATATAAATGCATGAGACCCGCTCATTGTCTCTTATATCAGACAAAGATGCCAATAAAATTTATGTTCATATTTTTTTATGTCATTTTTTATTATTTGCGGGTTATTATTTTATACATTTCATAGGTGGTCTTCACTATTTTTAGTTTTAGTCAAACCTTTATATAGAGAATAAAAGATAATTACATTTATTTTGGTATTTGAGGAAAAAAAATACATATTGTAAAATATTGTGTGGCTTCTGTGAAGCTGTCCTTCAGTGTTAAAGTTAGAAGCCCTATTAATAGTTATTTTGATCTAAAGAAACATAATGAAGCTGGTACTTGCAATGGATTGTTTCATGCAGCTTTCTCTGGTTATGACTGTTCTTCCTGTTTATGGCTGTTTATTTTTTAGACAGGAAATACTGTTACACTGACTTAATATGATTATTAAACACAGAGCATTAGAGTAGATTTGATGAACATTTTTAGATTCTGTTTAAAATGGTTCATATCATATATCTTATCATCTGTAGGGGCAGACTGAGCTATTGTGCAACAACTTAATGTAGTGAAAATTTAACCTCTGAGATACTTAACCAGTGCTGTGTATATTCACATTCATTGTATCTTCCAGTCTGCTTGCACTGCATTATAGTTTGTTTCATTAATTAAAAGACATATAACAACGATTTGCATTTTAGAAAGTGTTGGTATCTTTCTCAGATTTATAACAGTTAAAGATGACAACCTCTTGGAGTGATCGGCTCCAGAATTATGCAGATCTTCCAGCCAACATGGATGGTTTATCCATGAAGAAGTACAGAAGAGAGGTGCATCACAGAGTTTTTGTCAATAGAAGTTTGGCAATGGAGAAGATAAAATGCTTTGGCTTTGATATGGACTACACTCTAGCAGTGTATAAGTCTCCGGAGTATGAATCTCTTGGCTTTGATCTGACTGTGGAGCGACTGGTTTCCATTGGTTACCCACAAGAGCTGCTAAACTTTGTCTATGACCCTGCATTTCCCACAAGAGGCTTGGTGTTTGATACAACGTATGGAAACCTGCTGAAAGTAGATGCATATGGAAACATCCTTGTGTGCGCTCATGGTTTTAACTTCCTGCGTGGTCCAGAGATACGAGAGCTGTACCCAAACAAGTTCATTCAGCGTGGAGATACTGAGCGATTCTACATCCTCAACACACTCTTCAACCTCCCAGAGACATACCTCTTTGCCTGCCTGGTTGACTTCTTCACTAGTTGCTCCAGATATACAAGTTGTGAGATGGGCTTTAAAGATGGAGATCTTTTCATGTCCTTCAAGAGCATGTTTCAGGATGTCAGAGATGCTGTAGATTGGGTCCATTTCAAGGGCTCTCTAAAGGAGAAAACGGTGGAAAACCTGGAGAAATATGTGGTAAAAGATGCCAAATTGCCATTGCTTCTAAGCCGAATGAATGAAGTTTCCAAAGTGTTCCTTGTTACCAACAGTGACTACAAGTACACAGATAAAATCATGACATACTTGTTTGATTTTCCACATGGTCCAAAAGCAGGTACACCCCATCAGCCCTGGCAGTCCTACTTTGACCTTATTCTGGTGGATGCCAGGAAGCCAGTGTTTTTTGGGGAGGGCACAGTGCTCAGACAGGTGGACACGACCACTGGGAGACTGAAGATTGGGACATACACTGGTCCCTTGCAACATGGCATAGTGTATTCTGGTGGTTCCTCAGATATAGTTTGTGATTTATTGGGAGCAAAAGGAAAGGAAATCCTGTACATCGGTGACCACATCTTTGGAGACATCCTGAAGTCTAAGAAGCGGCAGGGCTGGAGAACGTTCCTGGTCATTCCTGAGCTGGCTCAGGAGCTGCACGTGTGGACCGACAAGAGCACACTGTTTGAGGAACTACAGAGTCTGGACATTTTCCTGGCAGAGCTCTACAAGCATTTGGACAGCAGCAGCAATGAGAGACCAGACATCAGCTCTCTTCAGAGGAGGATTAAGAAAGTGACCCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGTGGCTCTCGTCAGACTCTGTTTGCATCTCAAGTGATGCGTTACGCTGACCTGTACGCTGCATCCTTCATCAATCTCCTGTACTATCCCTTCAGCTACCTGTTCAGAGCCGCCCACGTCCTGATGCCTCACGAGTCCACCGTGGAGCACGCTCACGTGGACATTAATGACACGGAGTCGCCCATGGCCACACGTAACCGCCACTCCATCGACTTCAGAGACCGCGAGTGCAAGAGACACCAGCTGACCCGTTCCATAAGCGAGATCAACCCTCCACACCTCTTCCCTCAGACGCCGCAGGAGATCACACACTATGGCCTCACTTTAAAATGCATTGACAAAAATGAAAATGATAACTGGGAGAACGGATCTCTGTTAAAACTGAATTACAGAATCAGTTACAACTATATTTTTTGCATGATATTGAGGGAACATATAACAGTTACAAGACTGCCTTCAATCTTTGGATATAAGCCATATAGCATGCTGGGAAATGTCACACCAACGATGCAGCTTGCTCAGTACCTGTCTGAATGCGTGTAACATCGCCATCTTCGTTTCAAAAGTGATAGTATGCAAATTGCTGTCATATTATTGGGTGAAAAATGGAACACATGCAAATGTTGCCATTTTATGCAGAGTGAGATACAGGGTTTCAGGTTACTAGGAACTGAAGTGTCATAACCGTTTGGAAGACAACACTGAAATGTCTAATGCACTCGCCATGATCACTGTGTTATTA

Function

symbol description
nt5c2a Predicted to enable 5'-nucleotidase activity. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 45. Orthologous to human NT5C2 (5'-nucleotidase, cytosolic II).
nt5c2b Predicted to enable 5'-nucleotidase activity. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 45. Orthologous to human NT5C2 (5'-nucleotidase, cytosolic II).
nt5c2 Enables IMP 5'-nucleotidase activity. Involved in IMP catabolic process and allantoin metabolic process. Part of cytosol. Implicated in hereditary spastic paraplegia 45.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K01081 E3.1.3.5; 5'-nucleotidase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_10260457_10272063.mRNA True 2790 mRNA 0.42 19 10259735 10272262

Neighbor

gene id symbol gene type direction distance location
CI01000012_10244843_10249396 NA coding upstream 10236 10244843 ~ 10249499 (+)
CI01000012_10223957_10235955 NA coding upstream 23459 10223697 ~ 10236276 (+)
CI01000012_10196272_10198737 HPS6 coding upstream 60919 10196272 ~ 10198816 (+)
CI01000012_09977219_09983804 NA coding upstream 275869 9977011 ~ 9983866 (+)
CI01000012_09828421_09828926 NA coding upstream 430347 9828421 ~ 9829388 (+)
CI01000012_10296725_10299883 CYP17, CYP17A1 coding downstream 24366 10296628 ~ 10301555 (+)
CI01000012_10469322_10470665 LBX1A, LBX1 coding downstream 196321 10468583 ~ 10471373 (+)
CI01000012_10489814_10496226 TLX1, TLX1.L coding downstream 217465 10489727 ~ 10496584 (+)
CI01000012_10499885_10500843 SDHAF4 coding downstream 226953 10499215 ~ 10501778 (+)
CI01000012_10502102_10533782 NA coding downstream 229840 10502102 ~ 10533942 (+)
G75340 NA non-coding upstream 44516 10214916 ~ 10215219 (+)
G75339 NA non-coding upstream 44931 10214562 ~ 10214804 (+)
G75277 NA non-coding upstream 65737 10192989 ~ 10193998 (+)
G75272 NA non-coding upstream 119666 10138297 ~ 10140069 (+)
G75311 NA non-coding upstream 165565 10093847 ~ 10094170 (+)
G75276 NA non-coding downstream 2403 10274665 ~ 10277003 (+)
G75349 NA non-coding downstream 20951 10293213 ~ 10293445 (+)
G75355 NA non-coding downstream 46731 10318993 ~ 10319285 (+)
G75356 NA non-coding downstream 48280 10320542 ~ 10320760 (+)
G75429 NA non-coding downstream 187826 10460088 ~ 10460387 (+)
G73578 NA other upstream 1892108 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 2451880 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 4335430 5922385 ~ 5929186 (+)
G71623 NA other upstream 4443130 5813517 ~ 5816605 (+)
G75533 NA other downstream 872555 11144817 ~ 11145739 (+)
G76385 NA other downstream 2358493 12630755 ~ 12675666 (+)
G76374 NA other downstream 2473269 12745531 ~ 12749169 (+)
CI01000012_13029637_13033226 RGS17 other downstream 2743244 13029435 ~ 13038899 (+)
G76645 NA other downstream 3379597 13651859 ~ 13652234 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006667 nt5c2a coding NC_007124.7 CM002897.2 28634862 ~ 28674422 (-)