G160214


Basic Information

Item Value
gene id G160214
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 23238731 ~ 23239091 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU217109
TCAACGTACAGTTCAATATAGAGCAATCATTGCATGGAACAAGATTCCGACTTTTATAACTGAAACAAATTCTAAGATCACCTTCAAAACATGTGTAAAGAAGTATTTGGGGAAGGTTTATTTTCTGTGACAATGTCTACTTTTTATATATGGTGTGTTCTTTTCTTGTTTAAGCCTTTGTAGGTGGATTTGATATAACTttgatataattatttattgttattcctATAGGCATTGTGTTTTACTGTTGtagttgttattgttattattattgttatcattgttattattttcGGCAGGACCCCAGGAAGAATAGCAGGGCATCTGCCCAAGCTAATGGGGatccagtaaataaataaaa

Function

NR:

description
PREDICTED: nuclear protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU217109 True 361 lncRNA 0.32 1 23238731 23239091

Neighbor

gene id symbol gene type direction distance location
LOC103030816 NA coding upstream 143855 23060575 ~ 23094876 (+)
LOC103027426 LOC103027426 coding upstream 345430 22892472 ~ 22893301 (+)
LOC103027133 fzd9,fzd9b,LOC107563503,LOC107713270,LOC107691950 coding upstream 422333 22813535 ~ 22816398 (+)
LOC103026853 LOC108429884 coding upstream 502102 22728533 ~ 22736629 (+)
rnf7 rnf7,LOC107557824,LOC107713281,LOC107692028 coding upstream 511285 22722720 ~ 22727446 (+)
LOC103026225 cntn5,LOC107691883 coding downstream 138778 23377869 ~ 23673136 (+)
LOC103025495 LOC108429891 coding downstream 508651 23747742 ~ 23913263 (+)
LOC103024981 NA coding downstream 704602 23943693 ~ 23949888 (+)
nectin1 nectin1,LOC107758086,LOC107670612,LOC107563312,LOC102782356,LOC107691861 coding downstream 980768 24219859 ~ 24614929 (+)
cxcr5 NA coding downstream 1829820 25068911 ~ 25080426 (+)
G160212 NA non-coding upstream 10997 23227414 ~ 23227734 (+)
G160168 NA non-coding upstream 272140 22965333 ~ 22966591 (+)
G160160 NA non-coding upstream 290542 22911559 ~ 22948189 (+)
G160142 selenot,selt1b,LOC108429894,LOC108264179,LOC107557827,LOC107710848,LOC107684611 non-coding upstream 339334 22895055 ~ 22899397 (+)
G160137 baz1b non-coding upstream 378115 22857092 ~ 22860616 (+)
G160216 NA non-coding downstream 12986 23252077 ~ 23252817 (+)
G160253 NA non-coding downstream 622852 23861943 ~ 23915300 (+)
G160308 NA non-coding downstream 880788 24119879 ~ 24120092 (+)
G160314 NA non-coding downstream 903307 24142398 ~ 24143111 (+)
G160321 NA non-coding downstream 940572 24179663 ~ 24179956 (+)
G160134 NA other upstream 384650 22853412 ~ 22854081 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 1085946 22147844 ~ 22152785 (+)
fam174b NA other upstream 2164158 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 2226937 21009302 ~ 21011794 (+)
G159728 NA other upstream 2501682 20736598 ~ 20737049 (+)
G160306 NA other downstream 880038 24119129 ~ 24119825 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 3084729 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 3378171 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 3666153 26905244 ~ 26907627 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other downstream 3870580 27109671 ~ 27119264 (+)

Expression


Co-expression Network