G160216


Basic Information

Item Value
gene id G160216
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 23252077 ~ 23252817 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU217113
ATCCATATAGTTGAATCAAGAAACTGGTAAAGAAtggtacagaaaaaaaacaagccaacTGCTtataatcagatttatttttaaaaggtactgtagatatttaaacacaaacaaataaattaaaaactaagAAGGCAAAAAGTTTATCCAGGTGATgacagaagaaccacttttgctTTTTTAGAGAATCtttctgaatatatatatatatattttttttttaaagaaacccAAAATAATTAATCTGTGGTATCCCTCCAGAAGacctttctctccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU217113 True 277 lncRNA 0.28 2 23252077 23252817

Neighbor

gene id symbol gene type direction distance location
LOC103030816 NA coding upstream 157201 23060575 ~ 23094876 (+)
LOC103027426 LOC103027426 coding upstream 358776 22892472 ~ 22893301 (+)
LOC103027133 fzd9,fzd9b,LOC107563503,LOC107713270,LOC107691950 coding upstream 435679 22813535 ~ 22816398 (+)
LOC103026853 LOC108429884 coding upstream 515448 22728533 ~ 22736629 (+)
rnf7 rnf7,LOC107557824,LOC107713281,LOC107692028 coding upstream 524631 22722720 ~ 22727446 (+)
LOC103026225 cntn5,LOC107691883 coding downstream 125052 23377869 ~ 23673136 (+)
LOC103025495 LOC108429891 coding downstream 494925 23747742 ~ 23913263 (+)
LOC103024981 NA coding downstream 690876 23943693 ~ 23949888 (+)
nectin1 nectin1,LOC107758086,LOC107670612,LOC107563312,LOC102782356,LOC107691861 coding downstream 967042 24219859 ~ 24614929 (+)
cxcr5 NA coding downstream 1816094 25068911 ~ 25080426 (+)
G160214 NA non-coding upstream 12986 23238731 ~ 23239091 (+)
G160212 NA non-coding upstream 24343 23227414 ~ 23227734 (+)
G160168 NA non-coding upstream 285486 22965333 ~ 22966591 (+)
G160160 NA non-coding upstream 303888 22911559 ~ 22948189 (+)
G160142 selenot,selt1b,LOC108429894,LOC108264179,LOC107557827,LOC107710848,LOC107684611 non-coding upstream 352680 22895055 ~ 22899397 (+)
G160253 NA non-coding downstream 609126 23861943 ~ 23915300 (+)
G160308 NA non-coding downstream 867062 24119879 ~ 24120092 (+)
G160314 NA non-coding downstream 889581 24142398 ~ 24143111 (+)
G160321 NA non-coding downstream 926846 24179663 ~ 24179956 (+)
G160325 NA non-coding downstream 968984 24221801 ~ 24223581 (+)
G160134 NA other upstream 397996 22853412 ~ 22854081 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 1099292 22147844 ~ 22152785 (+)
fam174b NA other upstream 2177504 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 2240283 21009302 ~ 21011794 (+)
G159728 NA other upstream 2515028 20736598 ~ 20737049 (+)
G160306 NA other downstream 866312 24119129 ~ 24119825 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 3071003 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 3364445 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 3652427 26905244 ~ 26907627 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other downstream 3856854 27109671 ~ 27119264 (+)

Expression


Co-expression Network