G160253


Basic Information

Item Value
gene id G160253
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 23861943 ~ 23915300 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU217161
tttttttcagagctgtatatatatatatatatatatatatatatatatatatatatatatatatattaattactgTGTAAAACCACTGAACTGCTGTGCATTAACCTGATGATTGTTACCGAAGCATCAggataaatgtcttttttagtatatatagagatttatatctttatttacatttaatactCTGTGCCTTTTCCACCTCAGGTGAAATCTTCCTCATAAAGTGCAAAAGATTTAAATAAGTCATTGTTATAATCTGCAGTTTTATAAATCTATTTCTGTCAGTAGTGTAACATCAGTTGTAATGAAGAGCTGAGGTTATAACTGTCTAATGTATATcagtaatgtttttaaatgaatccAGTATGATAGTGTTCGAATCTCACTGCACTGTGAAAGCAATTTTTGGTACGTCACATttcaattctattttttttttttaagattttggtTAGACTTGAGTGTTGAGGTTGATAATAATGTTCTTATAAAGCTCTTATTAAGCCAGTCACAGATGTttaactagaaaagtgcatttcctgaaggaaacacAGGATACCTTAACAACTTACCTAAAGTATCAGTATCAGGTTGCTATGCAAAGAGTTGCAAACGCAGGTCTTGCTCAACATgcaattaatctggaaactttcatatattcattttttagaATGCAGATCAATCTCTGAATGCAAAATTCAGTTTGCTTCAATGTGTTTGATGATAATACTTTCTCTGAAACattgaaaaattattttaaactacACTGAGTTGTATTAAAGTACAAAGAAGGCATATATAAAGCATGTTCTGTGCTGCACCAATGCTTGTATTTGCATTTAGCCCTGAACCCTGAGCcactttagattttttaaatcagtatctctatattaaatcattaattagCTCTCTGGCTGATTAATAACAATTGAAACGATTGttcttttttcaaaaataatatactaataatGATACAGTCAGGGGTGTATGATGCGTTAATTCATTGGGTGAATGTGGAATCTGTGGAGTCTAAACCTGTTAGATTGGATGTCATAGACTGTCTGACTCGTTGTGCAACTTTATATCAATAAAAgattatggtaacactttctatgaatgtcatctctataagactctataaacatattcataacacattataatgcattcataaggcattataaacatggctatacatatttataaaactctatagtTCAtgatagccatgtttattatgcatcatgaactgtgattataatgcattaatagctgtgtttataacatgttatacatcaataccaagaaactgagtcccagcttgcagactgtatcatgacttaaaaagcttccaacttataaacacaccctcaataatcctataaatatatttttaactaccCATTAactattcttgtcttgaatataatattagttatagtcaattataatgtattataacaggtctttgtgcgctctaagtaaagtgacagactttcattgtgggactagatttttaacgatagatatacactattttaacatgtatatcataagcatagcttagaatgtattatgatcacaactcataatgcttaataaacatggctatagtgggtcatgcatttttataaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU217161 True 1638 lncRNA 0.30 2 23861943 23915300

Neighbor

gene id symbol gene type direction distance location
LOC103026225 cntn5,LOC107691883 coding upstream 188807 23377869 ~ 23673136 (+)
LOC103030816 NA coding upstream 767067 23060575 ~ 23094876 (+)
LOC103027426 LOC103027426 coding upstream 968642 22892472 ~ 22893301 (+)
LOC103027133 fzd9,fzd9b,LOC107563503,LOC107713270,LOC107691950 coding upstream 1045545 22813535 ~ 22816398 (+)
LOC103026853 LOC108429884 coding upstream 1125314 22728533 ~ 22736629 (+)
LOC103024981 NA coding downstream 28393 23943693 ~ 23949888 (+)
nectin1 nectin1,LOC107758086,LOC107670612,LOC107563312,LOC102782356,LOC107691861 coding downstream 304559 24219859 ~ 24614929 (+)
cxcr5 NA coding downstream 1153611 25068911 ~ 25080426 (+)
LOC103023437 NA coding downstream 1568644 25483944 ~ 25500609 (+)
LOC103024914 NA coding downstream 1588777 25504077 ~ 25510167 (+)
G160216 NA non-coding upstream 609126 23252077 ~ 23252817 (+)
G160214 NA non-coding upstream 622852 23238731 ~ 23239091 (+)
G160212 NA non-coding upstream 634209 23227414 ~ 23227734 (+)
G160168 NA non-coding upstream 895352 22965333 ~ 22966591 (+)
G160160 NA non-coding upstream 913754 22911559 ~ 22948189 (+)
G160308 NA non-coding downstream 204579 24119879 ~ 24120092 (+)
G160314 NA non-coding downstream 227098 24142398 ~ 24143111 (+)
G160321 NA non-coding downstream 264363 24179663 ~ 24179956 (+)
G160325 NA non-coding downstream 306501 24221801 ~ 24223581 (+)
G160328 NA non-coding downstream 337223 24252523 ~ 24255334 (+)
G160134 NA other upstream 1007862 22853412 ~ 22854081 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 1709158 22147844 ~ 22152785 (+)
fam174b NA other upstream 2787370 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 2850149 21009302 ~ 21011794 (+)
G159728 NA other upstream 3124894 20736598 ~ 20737049 (+)
G160306 NA other downstream 203829 24119129 ~ 24119825 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 2408520 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 2701962 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 2989944 26905244 ~ 26907627 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other downstream 3194371 27109671 ~ 27119264 (+)

Expression


Co-expression Network