G160314


Basic Information

Item Value
gene id G160314
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 24142398 ~ 24143111 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU217241
AATAGCAGCGTCGATAAGCTGATTTAGTGACAGGTCTTGAGCCCTGAATACTAACTCTGCTTGTAGATCTTCCCGTAATCCCCGCTGAAACATGGTTTTCAGCGCTGGCTCACTCCATCCGCTGCCTGCAGCGAGTGTGCGGAAGTCGAGGGAGTAACTTGCCGCAGAACGGGTGCCCTGTTTTAGTTCGCAAATTTGTAAACCCACCTCTTTTCTGGCTGCAGGGTGGTCAAATACAGCTTTAAACTGAGCTAAAAAGTGCGTCTCTGAAAGTAAGATCTCGCTATTGGCAGACCATAGAGCCGTAGCCCACTCCTTGGCTTTACCGGTGAGCAGTGAAATTACAAAATGAATCTTATCAGTCTCTTGACGGAACTGAGCCGCATTGTGATTAATATATAAAGTACATTGCATTAAAAAGCTCTTACATGTACCCGGAGAGCCGTCATAACGTTCAGGAACAGCAATAAAGACTGAGGAGGAAGGATTGGCAGGAGCACCGGCGTCAGCGGCCTGTTCaggtgcagcagcagcttcagcagcgGAGGGGCTCACACGCTGCACCAAACCCTGAACAAGCTGGACCAATTCTTCCATTTTCTGTTCCTGGCTGGCAATCCGCAGCTCCAAACCTGCTGGGTCCATCCGGGCGACGTCTTATGTTACATAAGACCACGTAAGTAGGATCCAAATGCAGGTTTAATAGCAGAGAGT

Function

NR:

description
PREDICTED: SH3 and multiple ankyrin repeat domains protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU217241 True 714 lncRNA 0.49 1 24142398 24143111

Neighbor

gene id symbol gene type direction distance location
LOC103024981 NA coding upstream 192510 23943693 ~ 23949888 (+)
LOC103025495 LOC108429891 coding upstream 229135 23747742 ~ 23913263 (+)
LOC103026225 cntn5,LOC107691883 coding upstream 469262 23377869 ~ 23673136 (+)
LOC103030816 NA coding upstream 1047522 23060575 ~ 23094876 (+)
LOC103027426 LOC103027426 coding upstream 1249097 22892472 ~ 22893301 (+)
nectin1 nectin1,LOC107758086,LOC107670612,LOC107563312,LOC102782356,LOC107691861 coding downstream 76748 24219859 ~ 24614929 (+)
cxcr5 NA coding downstream 925800 25068911 ~ 25080426 (+)
LOC103023437 NA coding downstream 1340833 25483944 ~ 25500609 (+)
LOC103024914 NA coding downstream 1360966 25504077 ~ 25510167 (+)
dhx34 dhx34,LOC102778731 coding downstream 1367212 25510323 ~ 25521145 (+)
G160308 NA non-coding upstream 22306 24119879 ~ 24120092 (+)
G160253 NA non-coding upstream 227098 23861943 ~ 23915300 (+)
G160216 NA non-coding upstream 889581 23252077 ~ 23252817 (+)
G160214 NA non-coding upstream 903307 23238731 ~ 23239091 (+)
G160212 NA non-coding upstream 914664 23227414 ~ 23227734 (+)
G160321 NA non-coding downstream 36552 24179663 ~ 24179956 (+)
G160325 NA non-coding downstream 78690 24221801 ~ 24223581 (+)
G160328 NA non-coding downstream 109412 24252523 ~ 24255334 (+)
G160349 NA non-coding downstream 441086 24584197 ~ 24587185 (+)
G160355 NA non-coding downstream 472595 24615706 ~ 24619513 (+)
G160306 NA other upstream 22573 24119129 ~ 24119825 (+)
G160134 NA other upstream 1288317 22853412 ~ 22854081 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 1989613 22147844 ~ 22152785 (+)
fam174b NA other upstream 3067825 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 3130604 21009302 ~ 21011794 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 2180709 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 2474151 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 2762133 26905244 ~ 26907627 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other downstream 2966560 27109671 ~ 27119264 (+)
c18h3orf33 NA other downstream 3641785 27784896 ~ 27796504 (+)

Expression


Co-expression Network