G160325


Basic Information

Item Value
gene id G160325
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 24221801 ~ 24223581 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU217262
aataaataaacattaagttCTGCATTCAGTATTTAGTCTTTGTCTGAATGTTTAATTTAGCTCAGTTCTAGTTCCATTTCAGTGTATCCCTGACTAATACTTATTAATGTTTGAGTATATAAAATGTAGTATAAATTGTAGTGTCAAGAAGTTGAGTATACTTAATTATTCTCAATCATGCACTCATACACAAAAACATTGAGTTATTGAGTGTGGTTATGACACTTATGTAGGACACTtttatcccacaatgcaatgtgcAAAGGAGAGGGATGAGCTATTCGCACCTGGAATTTTTACCTTTATTAGTAAAAAAtagatgataatgatgatgcaAGGGCATCATCACTTACGGTGTACTATCCTGCCCATCCTGCAatatttCAATACAGGTTCTGTCAAAACAATGTAATTCTGATATAAACTAGTATTTTTGTCTTTAACGCAATGCTTCAATGCTTCAATCTtaaaacagcagcagtatgtggacaagcattgtcctgctgaccAAGAATGCCCACAATGGATATGATATCTGTACCTACAGACTTCAGACAACTCATGTAATGCACCTTGTAATAACTGACAATTTAGTGACTAAGGCTTCTTAGTCACCTTTATTGAAACCTTATTATGTATTGAATTATTGACCAGCTCTAATTTCTGCACATCCAGCTTCTTATGAAAGATAAATGAGCAGTACTGTAAAGTAAACGTGTGGTAGATGCACCCTTGCACTTGCCCCCGCTCTGAGAATTTATCAGCACCTCCAGGCCCCTCGGGTCCACTCTCGGCCGTCTTTTAATAAACTGCTGTTTGAAAGTACATTTCCCAATCAATAGCGCCCTGCTGACCTCTAATGTTGTAAACAAACAGAGTGATGTGAAGCCCAGCTCCCGGGCCCGAGCGGACCTGCCCCCAGCGGCTCGGTCTAATGAGCCCAGCCAGCGCAGACAGCTGCGCCGGGTCAAACGGGAGAATGCGGACGTGATGGCGAGCGCATCTGCTTTTACGGACGGCAGTGCGCTCGTTTTTCACCTCCATTGATTTCTCTTCCCACCTTTCTTTGACCTTGGCTGCTGGGTTTCGTCACGGCCAAATAAACGCGAAACAGTAAAGGAATGCTGATCTCATTAAAACACCATTGATGGTTTTTTGaacagtttttcttttctttttttggggtTGTTGGGCAGTGACATACTTGTGTTTGAACCTTGGCTATCAAAGCTAAATCTTTACGtatctatttaaaaagtgaaagaaatcTATTCATTATGAAAGATGACAGATAACGACGAATGAGTGACTTTCGTGGTCCAAACCTTTATTTTAGTCTATAGCCTATAGTCTAAGAGGTGCttcacatctaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU217262 True 1374 lncRNA 0.40 2 24221801 24223581

Neighbor

gene id symbol gene type direction distance location
LOC103024981 NA coding upstream 271913 23943693 ~ 23949888 (+)
LOC103025495 LOC108429891 coding upstream 308538 23747742 ~ 23913263 (+)
LOC103026225 cntn5,LOC107691883 coding upstream 548665 23377869 ~ 23673136 (+)
LOC103030816 NA coding upstream 1126925 23060575 ~ 23094876 (+)
LOC103027426 LOC103027426 coding upstream 1328500 22892472 ~ 22893301 (+)
cxcr5 NA coding downstream 845330 25068911 ~ 25080426 (+)
LOC103023437 NA coding downstream 1260363 25483944 ~ 25500609 (+)
LOC103024914 NA coding downstream 1280496 25504077 ~ 25510167 (+)
dhx34 dhx34,LOC102778731 coding downstream 1286742 25510323 ~ 25521145 (+)
bicra gltscr1,LOC108413251 coding downstream 1325847 25549428 ~ 25564612 (+)
G160321 NA non-coding upstream 41845 24179663 ~ 24179956 (+)
G160314 NA non-coding upstream 78690 24142398 ~ 24143111 (+)
G160308 NA non-coding upstream 101709 24119879 ~ 24120092 (+)
G160253 NA non-coding upstream 306501 23861943 ~ 23915300 (+)
G160216 NA non-coding upstream 968984 23252077 ~ 23252817 (+)
G160328 NA non-coding downstream 28942 24252523 ~ 24255334 (+)
G160349 NA non-coding downstream 360616 24584197 ~ 24587185 (+)
G160355 NA non-coding downstream 392125 24615706 ~ 24619513 (+)
G160356 NA non-coding downstream 403861 24627442 ~ 24627919 (+)
G160368 NA non-coding downstream 639664 24863245 ~ 24863993 (+)
G160306 NA other upstream 101976 24119129 ~ 24119825 (+)
G160134 NA other upstream 1367720 22853412 ~ 22854081 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 2069016 22147844 ~ 22152785 (+)
fam174b NA other upstream 3147228 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 3210007 21009302 ~ 21011794 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 2100239 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 2393681 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 2681663 26905244 ~ 26907627 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other downstream 2886090 27109671 ~ 27119264 (+)
c18h3orf33 NA other downstream 3561315 27784896 ~ 27796504 (+)

Expression


Co-expression Network