G160383


Basic Information

Item Value
gene id G160383
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 25046714 ~ 25046914 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU217328
cttccctcagagagctgtgtatatatgtattatctgatgttttcaaatcagatttgagtcattaCTTGAGATGTTTACACAGCAGGTAGAAGTGgcacaaatctgatcaaatcaCTTGTAAATAAGAGTGCAGACCATAATTTTAACAGAAAGAAATCCGGTGTAACTatagtctgaacacagcctcAGAACTGTCTGAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU217328 True 201 lncRNA 0.36 1 25046714 25046914

Neighbor

gene id symbol gene type direction distance location
nectin1 nectin1,LOC107758086,LOC107670612,LOC107563312,LOC102782356,LOC107691861 coding upstream 431785 24219859 ~ 24614929 (+)
LOC103024981 NA coding upstream 1096826 23943693 ~ 23949888 (+)
LOC103025495 LOC108429891 coding upstream 1133451 23747742 ~ 23913263 (+)
LOC103026225 cntn5,LOC107691883 coding upstream 1373578 23377869 ~ 23673136 (+)
LOC103030816 NA coding upstream 1951838 23060575 ~ 23094876 (+)
cxcr5 NA coding downstream 21997 25068911 ~ 25080426 (+)
LOC103023437 NA coding downstream 437030 25483944 ~ 25500609 (+)
LOC103024914 NA coding downstream 457163 25504077 ~ 25510167 (+)
dhx34 dhx34,LOC102778731 coding downstream 463409 25510323 ~ 25521145 (+)
bicra gltscr1,LOC108413251 coding downstream 502514 25549428 ~ 25564612 (+)
G160369 NA non-coding upstream 139159 24907229 ~ 24907555 (+)
G160368 NA non-coding upstream 182721 24863245 ~ 24863993 (+)
G160356 NA non-coding upstream 418795 24627442 ~ 24627919 (+)
G160355 NA non-coding upstream 427201 24615706 ~ 24619513 (+)
G160349 NA non-coding upstream 459529 24584197 ~ 24587185 (+)
G160384 NA non-coding downstream 23 25046937 ~ 25048578 (+)
G160518 NA non-coding downstream 276489 25323403 ~ 25380493 (+)
G160543 NA non-coding downstream 370729 25417643 ~ 25419939 (+)
G160576 psmd8,LOC108413249,LOC107672785,LOC107554985 non-coding downstream 493495 25540409 ~ 25546750 (+)
G160617 kti12,LOC107715238,LOC107562123,LOC107725737 non-coding downstream 548038 25594952 ~ 25599301 (+)
G160306 NA other upstream 926889 24119129 ~ 24119825 (+)
G160134 NA other upstream 2192633 22853412 ~ 22854081 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 2893929 22147844 ~ 22152785 (+)
fam174b NA other upstream 3972141 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 4034920 21009302 ~ 21011794 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 1276906 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 1570348 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 1858330 26905244 ~ 26907627 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other downstream 2062757 27109671 ~ 27119264 (+)
c18h3orf33 NA other downstream 2737982 27784896 ~ 27796504 (+)

Expression


Co-expression Network