G160384


Basic Information

Item Value
gene id G160384
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 25046937 ~ 25048578 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU217329
ATCCCATTCACCCACAGGATGAAGTGCAACCAGATCTTCTCCAAACTTGCTACAAACACTCACATAGCAGGCATTAATTAGCACACAAACATCAGAAAATCACAAAACAGTGGAATTTCAGTGAGCTTTATTTCAAACAAAAtctctaatttttttgagaaccacatttttattttactaataaaGCTTCACTGCCAAAATGTGCCAattcaaaaagaacaaaaaaaaaaaaagccaaacagTCAAATTCTTGCATCGTGAACAGAATATTGACATTCAtctcaatgaaaaacaaaaagaaaacatcagGGCACAGGTTTTACAACTGATTTTCCTTCCCCAGTTACTCCGAATTTGTGGCTTTTAaaggtttcatttttttttttcttttaaacttaCTTTTCTTGGTTTCCCCAAAGTGTGAACCCACCCAAACTCAGCCCTCCCCAGCTGATGCATCTTATCCACATTCTTACTTTCCAAACACTGGCATCTATACCATCCAGGCTGGCTTTAGACCTGCTGTAGAGCAGACAGGGGTGATCACGGGCATCTCCTGAGCTGTAAGGCTgaagaacaaacaaacagcaccaTCAACTTCATAACAGTAGCCCCTCCCTGCTCTACAGCGAAGACGTGGAAAGATGCATCAGAGCAGCAGATCAGCACCCACCCACaaaacccacccacccacaacagaaaaacaaaaataataaataacccCTGAAGACTGAGATTGAGATCTTTTCACAAGAGTGacttttttaaaatccattttttaacAATCCAATTGAATATGGTGAGACAGTCTCAAGCTCAAtcttcaaaaaacaaaaaaataagccttAAATCTTCATTAGTTCACAGCCTTTACTTTCAGTATACACTTGGTCTTAATGGCATATGGTGATAGTGCACGCCAATGTGTATGAAAAAGAAAAGGCCATGTTCTCAATAAAAgtaggaaaaaataattaaagaaaaataacaaaaaaaaaaaggcaagctGCCAAATGCCTTGTTTAACACACATCCTCTCTCCTAGAGTCACATAAACCCCCTcagtatttatgtttttaataaagagtaaaataaacaaccCCACCCATTCCTCCACCCAAGAAATAGGTAAAAGGAGTAAAAAACGTCAATCTAATTAATAAAAGGAGGTCTATGTGCACAATATTTGGGCCACTGTAGGAGAAAGGATGAATGTCTAAGTTCAAACCTACTCTACCATCTGGTGCTGCAACTTAAATACAATTAccacctttaaaataaaacaccaagactttaagactttctTGTTTTGTCCTCACTTCAATTTATCCAATGAATCATCACTATCATTTTAGATGGGAAACCCCTTTCAAGTCACAAGTTGCACAGGTGCAACACCAATAGGTAGAGCAGGCAGAAccacaaatatatgtatatgtatgtctcGCCTAAAGTGACAAAATTATCAGGGGGCTCCTAAGACAATGCTGTGTCATGAATACGTTGAGCACATTAACTGTGCTGTACAAATAATGGCACAAACAAAGGCAATGGAGTGAACAAATACAATCGAATAAATAATACCaccatataatataaa
>TU217330
cacatttttattttactaataaaGCTTCACTGCCAAAATGTGCCAattcaaaaagaacaaaaaaaaaaaaagccaaacagTCAAATTCTTGCATCGTGAACAGAATATTGACATTCAtctcaatgaaaaacaaaaagaaaacatcagGGCACAGGTTTTACAACTGATTTTCCTTCCCCAGTTACTCCGAATTTGTGGCTTTTAaaggtttcatttttttttttcttttaaacttaCTTTTCTTGGTTTCCCCAAAGTGTGAACCCACCCAAACTCAGCCCTCCCCAGCTGATGCATCTTATCCACATTCTTACTTTCCAAACACTGGCATCTATACCATCCAGGCTGGCTTTAGACCTGCTGTAGAGCAGACAGGGGTGATCACGGGCATCTCCTGAGCTGTAAGGCTgaagaacaaacaaacagcaccaTCAACTTCATAACAGTAGCCCCTCCCTGCTCTACAGCGAAGACGTGGAAAGATGCATCAGA
>TU217331
cacatttttattttactaataaaGCTTCACTGCCAAAATGTGCCAattcaaaaagaacaaaaaaaaaaaaagccaaacagTCAAATTCTTGCATCGTGAACAGAATATTGACATTCAtctcaatgaaaaacaaaaagaaaacatcagGGCACAGGTTTTACAACTGATTTTCCTTCCCCAGTTACTCCGAATTTGTGGCTTTTAaaggtttcatttttttttttcttttaaacttaCTTTTCTTGGTTTCCCCAAAGTGTGAACCCACCCAAACTCAGCCCTCCCCAGCTGATGCATCTTATCCACATTCTTACTTTCCAAACACTGGCATCTATACCATCCAGGCTGGCTTTAGACCTGCTGTAGAGCAGACAGGGGTGATCACGGGCATCTCCTGAGCTGTAAGGCTgaagaacaaacaaacagcaccaTCAACTTCATAACAGTAGCCCCTCCCTGCTCTACAGCGAAGACGTGGAAAGATGCATCAGAGCAGCAGATCAGCACCCACCCACaaaacccacccacccacaacagaaaaacaaaaataataaataacccCTGAAGACTGAGATTGAGATCTTTTCACAAGAGTGacttttttaaaatccattttttaacAATCCAATTGAATATGGTGAGACAGTCTCAAGCTCAAtcttcaaaaaacaaaaaaataagccttAAATCTTCATTAGTTCACAGCCTTTACTTTCAGTATACACTTGGTCTTAATGGCATATGGTGATAGTGCACGCCAATGTGTATGAAAAAGAAAAGGCCATGTTCTCAATAAAAgtaggaaaaaataattaaagaaaaataacaaaaaaaaaaaggcaagctGCCAAATGCCTTGTTTAACACACATCCTCTCTCCTAGAGTCACATAAACCCCCTcagtatttatgtttttaataaagagtaaaataaacaaccCCACCCATTCCTCCACCCAAGAAATAGGTAAAAGGAGTAAAAAACGTCAATCTAATTAATAAAAGGAGGTCTATGTGCACAATATTTGGGCCACTGTAGGAGAAAGGATGAATGTCTAAGTTCAAACCTACTCTACCATCTGGTGCTGCAACTTAAATACAATTAccacctttaaaataaaacaccaagactttaagactttctTGTTTTGTCCTCACTTCAATTTATCCAATGAATCATCACTATCATTTTAGATGGGAAACCCCTTTCAAGTCACAAGTTGCACAGGTGCAACACCAATAGGTAGAGCAGGCAGAAccacaaatatatgtatatgtatgtctcGCCTAAAGTGACAAAATTATCAGGGGGCTCCTAAGACAATGCTGTGTCATGAATACGTTGAGCACATTAACTGTGCTGTACAAATAATGGCACAAACAAAGGCAATGGAGTGAACAAATACAATCGAATAAATAATACCaccatataatataaa
>TU217332
cacatttttattttactaataaaGCTTCACTGCCAAAATGTGCCAattcaaaaagaacaaaaaaaaaaaaagccaaacagTCAAATTCTTGCATCGTGAACAGAATATTGACATTCAtctcaatgaaaaacaaaaagaaaacatcagGGCACAGGTTTTACAACTGATTTTCCTTCCCCAGTTACTCCGAATTTGTGGCTTTTAaaggtttcatttttttttttcttttaaacttaCTTTTCTTGGTTTCCCCAAAGTGTGAACCCACCCAAACTCAGCCCTCCCCAGCTGATGCATCTTATCCACATTCTTACTTTCCAAACACTGGCATCTATACCATCCAGGCTGGCTTTAGACCTGCTGTAGAGCAGACAGGGGTGATCACGGGCATCTCCTGAGCTGTAAGGCTgaagaacaaacaaacagcaccaTCAACTTCATAACAGTAGCCCCTCCCTGCTCTACAGCGAAGACGTGGAAAGATGCATCAGAGCAGCAGATCAGCACCCACCCACaaaacccacccacccacaacagaaaaacaaaaataataaataacccCTGAAGACTGAGATTGAGATCTTTTCACAAGAGTGacttttttaaaatccattttttaacAATCCAATTGAATATGGTGAGACAGTCTCAAGCTCAAtcttcaaaaaacaaaaaaataagccttAAATCTTCATTAGTTCACAGCCTTTACTTTCAGTATACACTTGGTCTTAATGGCATATGGTGATAGTGCACGCCAATGTGTATGAAAAAGAAAAGGCCATGTTCTCAATAAAAgtaggaaaaaataattaaagaaaaataacaaaaaaaaaaaggcaagctGCCAAATGCCTTGTTTAACACACATCCTCTCTCCTAGAGTCACATAAACCCCCTcagtatttatgtttttaataaagagtaaaataaacaaccCCACCCATTCCTCCACCCAAGAAATAGGTAAAAGGAGTAAAAAACGTCAATCTAATTAATAAAAGGAGGTCTATGTGCACAATATTTGGGCCACTGTAGGAGAAAGGATGAATGTCTAAGTTCAAACCTACTCTACCATCTGGTGCTGCAACTTAAATACAATTAccacctttaaaataaaacaccaagactttaagactttctTGTTTTGTCCTCACTTCAATTTATCCAATGAATCATCACTATCATTTTAGATGGGAAACCCCTTTCAAGTCACAAGTTGCACAGGTGCAACACCAATAGGTAGAGCAGGCAGAAccacaaatatatgtatatgtatgtctcGCCTAAAGTGACAAAATTATCAGGGGGCTCCTAAGACAATGCTGTGTCATGAATACGTTGAGCACATTAACTGTGCTGTACAAATAATGGCACAAACAAAGGCAATGGAGTGAACAAATACAATCGAATAAATAATACCaccatataatataaatatcccACCcctcccacaaaaaaaaaaatcccaaatttccct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU217329 True 1600 lncRNA 0.37 1 25046937 25048536
TU217330 False 492 lncRNA 0.40 1 25047099 25047590
TU217331 False 1438 lncRNA 0.37 1 25047099 25048536
TU217332 False 1480 lncRNA 0.37 1 25047099 25048578

Neighbor

gene id symbol gene type direction distance location
nectin1 nectin1,LOC107758086,LOC107670612,LOC107563312,LOC102782356,LOC107691861 coding upstream 432008 24219859 ~ 24614929 (+)
LOC103024981 NA coding upstream 1097049 23943693 ~ 23949888 (+)
LOC103025495 LOC108429891 coding upstream 1133674 23747742 ~ 23913263 (+)
LOC103026225 cntn5,LOC107691883 coding upstream 1373801 23377869 ~ 23673136 (+)
LOC103030816 NA coding upstream 1952061 23060575 ~ 23094876 (+)
cxcr5 NA coding downstream 20333 25068911 ~ 25080426 (+)
LOC103023437 NA coding downstream 435366 25483944 ~ 25500609 (+)
LOC103024914 NA coding downstream 455499 25504077 ~ 25510167 (+)
dhx34 dhx34,LOC102778731 coding downstream 461745 25510323 ~ 25521145 (+)
bicra gltscr1,LOC108413251 coding downstream 500850 25549428 ~ 25564612 (+)
G160383 NA non-coding upstream 23 25046714 ~ 25046914 (+)
G160369 NA non-coding upstream 139382 24907229 ~ 24907555 (+)
G160368 NA non-coding upstream 182944 24863245 ~ 24863993 (+)
G160356 NA non-coding upstream 419018 24627442 ~ 24627919 (+)
G160355 NA non-coding upstream 427424 24615706 ~ 24619513 (+)
G160518 NA non-coding downstream 274825 25323403 ~ 25380493 (+)
G160543 NA non-coding downstream 369065 25417643 ~ 25419939 (+)
G160576 psmd8,LOC108413249,LOC107672785,LOC107554985 non-coding downstream 491831 25540409 ~ 25546750 (+)
G160617 kti12,LOC107715238,LOC107562123,LOC107725737 non-coding downstream 546374 25594952 ~ 25599301 (+)
G160616 sec11a,LOC107691153,LOC107562127 non-coding downstream 563138 25611716 ~ 25615298 (+)
G160306 NA other upstream 927112 24119129 ~ 24119825 (+)
G160134 NA other upstream 2192856 22853412 ~ 22854081 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 2894152 22147844 ~ 22152785 (+)
fam174b NA other upstream 3972364 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 4035143 21009302 ~ 21011794 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 1275242 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 1568684 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 1856666 26905244 ~ 26907627 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other downstream 2061093 27109671 ~ 27119264 (+)
c18h3orf33 NA other downstream 2736318 27784896 ~ 27796504 (+)

Expression


Co-expression Network