G160543


Basic Information

Item Value
gene id G160543
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 25417643 ~ 25419939 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU217527
TTATTTATGGAAGTAGTGAGTTTATTGATGTGTTTCCCGCTTGTAACCATAAAGCCATTTCCATAGGAGtcaatcatattttactactaATATATGCATCTGATATTAGTCTCCCTCGCCCCTCCTCCCCATCCCATAATCCAGCAGGCAGTTACAGGGTTCAGATCGAAGCCGTTCGGGTGCATAGTGAGACAGTCACGTACAGAAATACTGTCACAGGAAGaggaaagaaatagaaaaacaacttaaaaatatatatatcatatcatatcatatatcgtATCGTTTTATATAGAAGAACAAAGCACACCACAGGTCGTCCTCCAGAGAAGTCATGATTGCAACATCAACTATACAGGCATTACAAAGACGCTACTTAAGAACCAAATAAACCCGATGATTGGatgctgatttttattttagttttttttatgtcttggAGTGAAGATACAAGAGTTTTGCACTCGGAGTGACGTTCCTAATCCCCGTGCCCCGCCCTGCCCTGACTCCAGCTCACACCTTCCGCTGGGGTTCCAGTTCCGTCCTCACTCTCACTGGGTTTAACCATCGCCTGACTGGTTGTGCAAAATGCTGCCAGTGTGTATACCACCCTACAGCAGGACTAAATGCCAACCTGGGCACAGCCACGGGTTCAGCTAATCAATAGGAAATAATCGACTGGAAATCTGAAATATTTAGTTCAATTATGGGATCAAATTATCCTAGtcacttgtgtgtgtgcgtgtataaatgtgtgtaatgttggtatataaatgtgtgtgtgtgtgtgtatgtgtgtgtctgtagggACATTAACATTCAGTTTATAATAAGGTATTATTAACTATCTGCCTCGATCCAACCAGTAACCACAATCTTAAATCAGGGCTCAGTTTAATTCATCCAAATAAATAAGACCATCACCAGAACACACCAGCTGATGTAATTTAGAGCTGTACAATATGTTGTTTCAGCATCATCGCAATgtcaaattacagtttataatttctttaaacaaaaaaaagtgtgccaaagttttatttgagaaaaaaaaaacatatagcaAATTAAAGCTTAAATCAtgttataacttttttttgctgcataaaacaaaagaaaagaaaaccttACTGTTCTCAATTTTGTAACAATACCTACCAGAGACAAATTATatcaaattttgtaattttgcaatctgcagTGTATAGAGCACATACTTCATGTGATGTTGACCCTCAGTTTTAATCAATAATATGCAGTCTTGCTGTTGTATCAGAACATTCTGAGGTCCCAGCCTCAAATCATCATCAGCCAATCCAAACATGCCATTGATCCACCTCTGCCATTCAGGTGACAGCATTATACATTTGGACCAATCAAACTCCACCCCTTAATCTCAAAGCTTTAAACTATTGACCCAGGAAGTTCTGACGTCCTGGAAACTCGACCCTAACAGGAAATAGAACATCtactttatattcatatatttttagcattttctgtaataataaacattagaaAGTAAATGAATAATTTCACCAGTTTGATCATATGTTCTCGGTTTGATTCACTATACAGGTAAAGGTTGATACAAAGAACCTTCATATACAAGCAGAAATctattaaaaagaaacaaaaaaaaacgataaaagcaacaggaaaaaaaaaacaggattaaaagAATCGGAAGCATCTCTGTTCTGATTGTTAAActcattctgtgttttttgtatgatttatgATGCATTCCTGAATCTGAATCTtgcttccaaaaaaaataaacataaaaaaagaactttaaaataattacatgttTAAAATCTCATGTACTGATGGACTGATAATTGATTTTGGAATcatattttcatgtttaacagttTGAAACGCTGTATTTAAGAGTAATAACGGAAACGAGCGAAAAGTGCTGCATGGaacagcagtagcagtagtagaagtagtagcagAATTAAACGATTTCTGTTTGATATCGAACCAGAATATGCACCTCTGATACATGAAATGATTTGAAGAGAGCAGTTTGATTATTGGTCAGTAGTACGTTCACCGTGCTGTGGCCCCGCAGGGTCCCCTGGTGGCCCGTGCTAGATCTGCATCTGCTCCAGGTATTTGTAGGTGGGGTTCTCGTAGCCGTGGTTCTGCATCTTGCTCAGGTGACGCTCCTCTGGGCTCAGCATGGGATCCACCTATCAAATGACGGCTCATTAGCATTTTACAGCATATGGTTTAATCTGTATGCATCACATTtgtgtgcg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU217527 True 2273 lncRNA 0.37 2 25417643 25419939

Neighbor

gene id symbol gene type direction distance location
cxcr5 NA coding upstream 337217 25068911 ~ 25080426 (+)
nectin1 nectin1,LOC107758086,LOC107670612,LOC107563312,LOC102782356,LOC107691861 coding upstream 802714 24219859 ~ 24614929 (+)
LOC103024981 NA coding upstream 1467755 23943693 ~ 23949888 (+)
LOC103025495 LOC108429891 coding upstream 1504380 23747742 ~ 23913263 (+)
LOC103026225 cntn5,LOC107691883 coding upstream 1744507 23377869 ~ 23673136 (+)
LOC103023437 NA coding downstream 64005 25483944 ~ 25500609 (+)
LOC103024914 NA coding downstream 84138 25504077 ~ 25510167 (+)
dhx34 dhx34,LOC102778731 coding downstream 90384 25510323 ~ 25521145 (+)
bicra gltscr1,LOC108413251 coding downstream 129489 25549428 ~ 25564612 (+)
ehd2 ehd2b,ehd2,LOC103039027,LOC108413254,LOC101154661,LOC107565090,LOC107668886,LOC107670629 coding downstream 146353 25566292 ~ 25576097 (+)
G160518 NA non-coding upstream 37150 25323403 ~ 25380493 (+)
G160384 NA non-coding upstream 369065 25046937 ~ 25048578 (+)
G160383 NA non-coding upstream 370729 25046714 ~ 25046914 (+)
G160369 NA non-coding upstream 510088 24907229 ~ 24907555 (+)
G160368 NA non-coding upstream 553650 24863245 ~ 24863993 (+)
G160576 psmd8,LOC108413249,LOC107672785,LOC107554985 non-coding downstream 120470 25540409 ~ 25546750 (+)
G160617 kti12,LOC107715238,LOC107562123,LOC107725737 non-coding downstream 175013 25594952 ~ 25599301 (+)
G160616 sec11a,LOC107691153,LOC107562127 non-coding downstream 191777 25611716 ~ 25615298 (+)
G160647 NA non-coding downstream 284578 25704517 ~ 25706252 (+)
G160654 NA non-coding downstream 318848 25738787 ~ 25739361 (+)
G160306 NA other upstream 1297818 24119129 ~ 24119825 (+)
G160134 NA other upstream 2563562 22853412 ~ 22854081 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 3264858 22147844 ~ 22152785 (+)
fam174b NA other upstream 4343070 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 4405849 21009302 ~ 21011794 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 903881 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 1197323 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 1485305 26905244 ~ 26907627 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other downstream 1689732 27109671 ~ 27119264 (+)
c18h3orf33 NA other downstream 2364957 27784896 ~ 27796504 (+)

Expression


Co-expression Network