G160616 (sec11a,LOC107691153,LOC107562127)


Basic Information

Item Value
gene id G160616
gene name sec11a,LOC107691153,LOC107562127
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 25611716 ~ 25615298 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU217651
cattttttttttattccatacAAAATTCTGAACTTTAGAAACAGGTTTGAGAGATTCGAACATATGAGGGCAAGAACATCAGAAAGAAGACAAGAAGTAAACATGAACATGGGTTTGGTATGGCATGGcaagattattaaaaacaaatgttacaAGTTTTTTAGATTTCACCCCTCGCTGGACAACTGACTttgacagaataaaaaatagccACGACCAGCTTTAGCATGAGCATGATCTTAACAAGCATATTTAACACACTACAAAAACTGGCCCACAGCAGGGTTTCCACACCGTTTTTCCTCTTCATTCCAGATTTGATGGAGTTTCACTCTCTATGTACCAATACAAAAAGTCCCAGCATACATAGTACAGCATACTTAAATTTAGGATAGTCGTTCATTAGAATTGTAACAATTCCTATGTAAGGCACAAACCCTCTGGCTCTGCCCACCACATCTTTCTTCTCCAGCCAGTGCTGCCCCCGCTTGTACAGGCCTCGGTCATCCACAGAGTTATTATCACCTTTCGTCAGGAACTTGATATCTCCATTTTCTTTCTCGTGGATTTTTAGCACTCTATGCACAATGGGGATCTCTCTTCCTTCAATCCTGAACACCACAATTTCTCCCACTCTTATTGGATCTTCCACACGGTTGGTAAGGAAGAGGAGGTCACCTCTGTGAAATGCAGGCTCCATGCTCCCACTgagttttaataaacaaaaacagtcaTACATGCAGAACAATAGATACAGTGTCTTCTTTT
>TU217652
TAAAATGTTCAGAGTGCACTGCCTTCCTATAATAATTAAAGGGAACTGAGAGACTCCAGCTGATGTTTTTGTGCTGTTAATATTCTGGGCTGAAATTCagatattaaaatacaaatttaatacaTCACTTACTTCTCGTGGATTTTTAGCACTCTATGCACAATGGGGATCTCTCTTCCTTCAATCCTGAACACCACAATTTCTCCCACTCTTATTGGATCTTCCACACGGTTGGTAAGGAAGAGGAGGTCACCTCTGTGAAATGCAGGCTCCATGCTCCCACTGAGAACCACTACAATGGGACTTTCACTCCCAGTGACCACCATTAACCCCTTCCAGATCATCAGAGCTGAAGAAACGATCATCCCGAAGTTCAGCACCTGATAATAGAGCTGAAACAGAGAGGAATACGGGTGAGGAACTCTCCGGAACAGCTGCTGAACTCCCTCCTCTTCATTCTCCTCAGTAGAAGCTGCAGAAACCCCGCGGACTGAGGGAGAATCTGTAGTTAGTTAAAGTGTGGATTCTGCTctagaggagaggagaggagatcTGAACTCAGGAGAGAAATTAAAGATGACGTATTGTAAGACTGAGACACAGACCTGCCGCTTATTCATCCGCCGAACATCGTCCAGAAAGTCCAGAGAGAGCATTTTACCGCGGAGATCCTCTGATTATGATCACACTGAGCTtaaactctctctctacacTCCTCACAGCGGAGCAGGaggataaataaacagaatttaaCACGGGCTGATACAGAGGAACTTCCTGTGATTCAGGAAAGGCTGATTTAGAATCCGGAGGAAACTGCGTTAAAGAGGCTTTTACAAAATAAGAGCACGTCCGCCATCAGCAACAACTACTTAAGAGTTTTTCATAtaattctttattaaat

Function

symbol description
sec11a Predicted to enable peptidase activity. Predicted to be involved in signal peptide processing. Predicted to act upstream of or within proteolysis. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of signal peptidase complex. Orthologous to several human genes including SEC11A (SEC11 homolog A, signal peptidase complex subunit).

NR:

description
signal peptidase complex catalytic subunit SEC11A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU217651 False 768 lncRNA 0.40 4 25611716 25613928
TU217652 True 904 lncRNA 0.44 2 25613586 25615298

Neighbor

gene id symbol gene type direction distance location
LOC111194838 LOC108435311 coding upstream 17462 25593386 ~ 25594254 (+)
LOC103039536 napab,napa,LOC103039536,LOC108413256,LOC107668964,LOC107758075,LOC108264617,LOC103368726 coding upstream 25022 25581159 ~ 25586694 (+)
ehd2 ehd2b,ehd2,LOC103039027,LOC108413254,LOC101154661,LOC107565090,LOC107668886,LOC107670629 coding upstream 35619 25566292 ~ 25576097 (+)
bicra gltscr1,LOC108413251 coding upstream 47104 25549428 ~ 25564612 (+)
dhx34 dhx34,LOC102778731 coding upstream 90571 25510323 ~ 25521145 (+)
LOC103041999 LOC108435342,LOC107709801,LOC107691146 coding downstream 17286 25632584 ~ 25643495 (+)
LOC103042827 NA coding downstream 49488 25664786 ~ 25686023 (+)
frmd5 frmd5,LOC108435336,LOC570903,LOC107562133,LOC107556247 coding downstream 73955 25689253 ~ 25838066 (+)
blm NA coding downstream 230318 25845616 ~ 25864023 (+)
ankrd34c ankrd34c,LOC103039005,LOC107691151,LOC107556256,LOC107715204,LOC107690404,LOC107551450 coding downstream 414501 26029799 ~ 26036700 (+)
G160617 kti12,LOC107715238,LOC107562123,LOC107725737 non-coding upstream 12415 25594952 ~ 25599301 (+)
G160576 psmd8,LOC108413249,LOC107672785,LOC107554985 non-coding upstream 64966 25540409 ~ 25546750 (+)
G160543 NA non-coding upstream 191777 25417643 ~ 25419939 (+)
G160518 NA non-coding upstream 231223 25323403 ~ 25380493 (+)
G160384 NA non-coding upstream 563138 25046937 ~ 25048578 (+)
G160647 NA non-coding downstream 89219 25704517 ~ 25706252 (+)
G160654 NA non-coding downstream 123489 25738787 ~ 25739361 (+)
LOC111194781 NA non-coding downstream 223140 25838438 ~ 25842937 (+)
G160732 NA non-coding downstream 331497 25946795 ~ 25947007 (+)
G160746 NA non-coding downstream 378422 25993720 ~ 25993971 (+)
G160306 NA other upstream 1491891 24119129 ~ 24119825 (+)
G160134 NA other upstream 2757635 22853412 ~ 22854081 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 3458931 22147844 ~ 22152785 (+)
fam174b NA other upstream 4537143 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 4599922 21009302 ~ 21011794 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 708522 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 1001964 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 1289946 26905244 ~ 26907627 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other downstream 1494373 27109671 ~ 27119264 (+)
c18h3orf33 NA other downstream 2169598 27784896 ~ 27796504 (+)

Expression


Co-expression Network