G160715


Basic Information

Item Value
gene id G160715
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 25738881 ~ 25739362 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU217810
CCCGTCAATGTtctcgtccctgttcccatgtccggtcccgtccagtctcagtctcctgtccatttccccgtccagtctccgtctcatgtccagttccccgtccagtctccgtctcatgtccagttccccgtccagtctccgtctcctgtccagttccccgtccagtctccgtctcatgtccagtctccgtcacctgtccagttccccgtccagtctctgtctcctgtccagttccccgtccagtctccgtcacctgtccagttccctgtccag
>TU217811
CCCGTCAATGTtctcgtccctgttcccatgtccggtcccgtccagtctcagtctcctgtccatttccccgtccagtctccgtctcatgtccagtctccgtcacccgtccagttccccgtccagtctccgtcacctgtccagttccccgtccagtctcagtctcctgtccagttccctgtccagtctcagtctcctgtccagttccccgtccagtctccgtcacctgtccagttccccgtccagtctctgtctcctgtccagttccccgtccagtctccgtcacctgtccagttccctgtccag
>TU217812
CCCGTCAATGTtctcgtccctgttcccatgtccggtcccgtccagtctcagtctcctgtccatttccccgtccagtctccgtctcatgtccagttccccgtccagtctccgtctcatgtccagtctccgtcacctgtccagttccccgtccagtctctgtctcctgtccagttccccgtccagtctccgtcacctgtccagttccctgtccag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU217810 False 273 TUCP 0.60 2 25738881 25739362
TU217811 True 303 TUCP 0.61 2 25738881 25739362
TU217812 False 213 lncRNA 0.60 2 25738881 25739362

Neighbor

gene id symbol gene type direction distance location
alpk3 NA coding downstream 76048 25644396 ~ 25662833 (-)
znf592 NA coding downstream 112942 25617017 ~ 25625939 (-)
LOC103040897 sec11a,LOC107691153,LOC107562127 coding downstream 123671 25611709 ~ 25615210 (-)
LOC103041208 sec11a,LOC107691153,LOC107562127 coding downstream 123687 25605085 ~ 25615194 (-)
kti12 kti12,LOC107715238,LOC107562123,LOC107725737 coding downstream 139476 25594906 ~ 25599405 (-)
ctsh ctsh,LOC106561173 coding upstream 124965 25864327 ~ 25873302 (-)
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107690363,LOC108230026,LOC100708145 coding upstream 135878 25875240 ~ 25931827 (-)
znf710 znf710,LOC107714783,LOC107715226,LOC107551465 coding upstream 324213 26063575 ~ 26101275 (-)
LOC103035975 LOC107714781 coding upstream 609799 26349161 ~ 26426272 (-)
LOC103047806 NA coding upstream 1061927 26801289 ~ 26806334 (-)
G160684 napab,LOC103039536,LOC108413256,LOC107668964,LOC107758075,LOC108264617 non-coding downstream 152201 25581172 ~ 25586680 (-)
G160608 ehd2,LOC103039027,LOC107758046,LOC108248800 non-coding downstream 169616 25566336 ~ 25569265 (-)
G160580 NA non-coding downstream 214837 25523108 ~ 25524044 (-)
G160563 NA non-coding downstream 238084 25500696 ~ 25500797 (-)
G160562 LOC108442494 non-coding downstream 240643 25483988 ~ 25498238 (-)
G160727 NA non-coding upstream 101160 25840522 ~ 25843880 (-)
G160725 NA non-coding upstream 122199 25861561 ~ 25863390 (-)
G160756 idh2,idhp,LOC107714782,LOC103368556 non-coding upstream 306958 26046320 ~ 26063360 (-)
G160789 NA non-coding upstream 480321 26219683 ~ 26255915 (-)
G160800 sema4b,LOC107714785,LOC107691120,LOC107556264 non-coding upstream 575385 26314747 ~ 26319147 (-)
LOC103041696 NA other downstream 136169 25600660 ~ 25602712 (-)
G160566 NA other downstream 262034 25476094 ~ 25476847 (-)
LOC103024596 NA other downstream 361015 25366454 ~ 25377866 (-)
G160476 NA other downstream 1110961 24626998 ~ 24627920 (-)
G160458 nectin1,LOC107561861,LOC107670612,LOC107563312,LOC107758086,LOC107691861 other downstream 1334242 24399395 ~ 24404639 (-)
LOC103037634 NA other upstream 602989 26342351 ~ 26345709 (-)
G160979 ccnl1,ccnl1a,LOC107710830,LOC107684610,LOC107714439,LOC107691967,LOC107563513 other upstream 1370345 27109707 ~ 27119253 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other upstream 1690579 27429941 ~ 27578918 (-)
LOC111194804 NA other upstream 2854138 28593500 ~ 28652947 (-)
LOC103037190 NA other upstream 3147549 28886911 ~ 28941387 (-)

Expression


Co-expression Network