G160803


Basic Information

Item Value
gene id G160803
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 26347637 ~ 26349594 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU217921
TGAAAACTCTCCAGTGTATACCTTTATTTCAAAAGATTCCTGTTTACTTAATCTTTACAATAAAAAGgatatttttttgtacataattTAGTCATAATTTCTATCAACATTCCATATATCTCATTTtttaaactagaaaaaaaaatcagcagctATTGACCTTCTTAAAAAcgatattttttctttataaaacaatATGTGACCATTTGGGACAATGGTATAacctaattttaaaaaatcatgtttaatgAAAACTTGAGAGCCATAGTGAATTTTGTTGAAAGTGAAATTATACTAGTAGCTGTAAATACATCAAATTATCACCTAATTCTCAGGAATCAGCAGGGAAGTTGTTTAGTGACATATCACAGCTGCAGGCTCATCTGGACATCACTAAACATCTCCTCACTGGTTCCTGAAGTACATTTTGCAATACAGATCCTGTAATACAAATGTGATATAGACAGATCAGTCAGATGGGTAGAGTTAAAGAAGAGTCTTAAAGAAGAGTTTTGCTGGCCTGACAGTAGCTGCCCATACTGACATCACTACAAAGTAATGAGAATTCTCCCAATAAACCTCTAGTCTGGAAATTTGTCTTGTAAAAAAGCCTATTTTAACCCCTATAACAGTTATTGCCTCAATTAAAAGTGTTGTTAgcattattaacatatttaatgacTGAATGGAAAAATGCTAAGTCCATAAAACAAATGTTTCTTGCAATGTTTATGTAtcagttttacttttttctgcacaaacagtactgtgcaaaagttgcTTAAACCATTTTTCTGGACGGTTTTTgcttgtataaatataaaacacacaaatgcaGTGGAAACGAACAAACAGAAATTTTAATGTTATACTTATtatttcccagacagggattaaacctagtcttggactacactcCTGTAAATGGAATTTGGTAactggtttagtttagttaacacactgacacacaaaaTGACTAAtgctgtattaatattatttgtaaCTTGTTCTATTTAagcaacattatttaaaaaaatgaacattttcttAATCACTGTGATTCTCCACTGATCTGTAATAGGGGGAATAGCACTCCTACTGCGCTATGTATCTTTGGTTCGCAGGAAAACGCTCAACAACAACTGCAAAATTGTCTAAGTGTAATGCTGTATAACCTGAGTCATATTTCTGCAAAATCCTAAACTATTACTCAACCACATCAGTCCACATGGTTCTTTTACCTCAGATGCCGGTTTCTGTATCTCtgagcttgtccagaaatgcatgtgtaaagcgtgttCTTTAGTGGTGTATAAGGAGAACAGGAGCAAGAAATAAAAATTTTCTGAGCAAATAAACTGTTACGGCCCAGTTTAGATCTTTTTAGTACACTTTTCTCAAGCAACAAaagacttttgcacagtactgagCATTTTGCTATGCATAAAAACCAGTGGTTGTCAATACTGGAGTCAAGCTGGGGTAGATATTTAAACAGCTCTCTGCACTTATGCTTTTAATCTTCTCTATTCTGGTCGCAGTATAGTTGAGTAGTTTAGTTTACGGGTTGGTGTTTGCTTCCacgtgagaaaaaaaaagaaagttagtTTCTTGCAGTCAGGACCACTGAGGTGACTAAACTGCCCAAGGCCACCACCAGAGCACCAAGCAGAAGCTTCCAAGACATGCCCTGAAACAACAGAAACCCACAGCAGAAATTAAAGAAAGACAGATGAAGAGTTCCACACTGTTTGGCAGGCTTTCCTGCTCCCAACAACACTTCCCTTTTCTTCTCAAGTCATTGGCAGCCATTCACTTACAGGGGGCTTCTTTTTGGAGGGTTTGAGGAAGGGTGCTATGTTCTCCCCGAGCAGCTCTGCAGATTTTGGATTCCACTTCTGCATCTCAGTGACTCCTGCTTGTCTTTTGACCAGCTTGGACAGTTCAGCATGTATGGC
>TU217922
GACCTTCTTAAAAAcgatattttttctttataaaacaatATGTGACCATTTGGGACAATGGTATAacctaattttaaaaaatcatgtttaatgAAAACTTGAGAGCCATAGTGAATTTTGTTGAAAGTGAAATTATACTAGTAGCTGTAAATACATCAAATTATCACCTAATTCTCAGGAATCAGCAGGGAAGTTGTTTAGTGACATATCACAGCTGCAGGCTCATCTGGACATCACTAAACATCTCCTCACTGGTTCCTGAAGTACATTTTGCAATACAGATCCTGTAATACAAATGTGATATAGACAGATCAGTCAGATGGGTAGAGTTAAAGAAGAGTCTTAAAGAAGAGTTTTGCTGGCCTGACAGTAGCTGCCCATACTGACATCACTACAAAGTAATGAGAATTCTCCCAATAAACCTCTAGTCTGGAAATTTGTCTTGTAAAAAAGCCTATTTTAACCCCTATAACAGTTATTGCCTCAATTAAAAGTGTTGTTAgcattattaacatatttaatgacTGAATGGAAAAATGCTAAGTCCATAAAACAAATGTTTCTTGCAATGTTTATGTAtcagttttacttttttctgcacaaacagtactgtgcaaaagttgcTTAAACCATTTTTCTGGACGGTTTTTgcttgtataaatataaaacacacaaatgcaGTGGAAACGAACAAACAGAAATTTTAATGTTATACTTATtatttcccagacagggattaaacctagtcttggactacactcCTGTAAATGGAATTTGGTAactggtttagtttagttaacacactgacacacaaaaTGACTAAtgctgtattaatattatttgtaaCTTGTTCTATTTAagcaacattatttaaaaaaatgaacattttcttAATCACTGTGATTCTCCACTGATCTGTAATAGGGGGAATAGCACTCCTACTGCGCTATGTATCTTTGGTTCGCAGGAAAACGCTCAACAACAACTGCAAAATTGTCTAAGTGTAATGCTGTATAACCTGAGTCATATTTCTGCAAAATCCTAAACTATTACTCAACCACATCAGTCCACATGGTTCTTTTACCTCAGATGCCGGTTTCTGTATCTCtgagcttgtccagaaatgcatgtgtaaagcgtgttCTTTAGTGGTGTATAAGGAGAACAGGAGCAAGAAATAAAAATTTTCTGAGCAAATAAACTGTTACGGCCCAGTTTAGATCTTTTTAGTACACTTTTCTCAAGCAACAAaagacttttgcacagtactgagCATTTTGCTATGCATAAAAACCAGTGGTTGTCAATACTGGAGTCAAGCTGGGGTAGATATTTAAACAGCTCTCTGCACTTATGCTTTTAATCTTCTCTATTCTGGTCGCAGTATAGTTGAGTAGTTTAGTTTACGGGTTGGTGTTTGCTTCCacgtgagaaaaaaaaagaaagttagtTTCTTGCAGTCAGGACCACTGAGGTGACTAAACTGCCCAAGGCCACCACCA

Function

GO:

id name namespace
GO:0015250 water channel activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU217921 True 1958 lncRNA 0.36 1 26347637 26349594
TU217922 False 1502 lncRNA 0.35 1 26347794 26349295

Neighbor

gene id symbol gene type direction distance location
sema4b sema4b,LOC107714785,LOC107556264,LOC107691120,LOC107715225 coding upstream 29249 26193982 ~ 26318388 (+)
idh2 idh2,LOC103368556 coding upstream 284323 26046342 ~ 26063314 (+)
ankrd34c ankrd34c,LOC103039005,LOC107691151,LOC107556256,LOC107715204,LOC107690404,LOC107551450 coding upstream 310937 26029799 ~ 26036700 (+)
blm NA coding upstream 483614 25845616 ~ 25864023 (+)
frmd5 frmd5,LOC108435336,LOC570903,LOC107562133,LOC107556247 coding upstream 509571 25689253 ~ 25838066 (+)
LOC103030887 NA coding downstream 406988 26756582 ~ 26789753 (+)
veph1 veph1,LOC106613251 coding downstream 504286 26853880 ~ 27052199 (+)
LOC103022175 LOC103022175,LOC108437972 coding downstream 739281 27088875 ~ 27103594 (+)
LOC111194784 LOC107688027,LOC107751101,LOC107570926,LOC107731862,LOC106579815,LOC106606817 coding downstream 852900 27202494 ~ 27203910 (+)
ssr3 ssr3,LOC107571207,LOC106581450 coding downstream 1073916 27423510 ~ 27429781 (+)
G160755 NA non-coding upstream 262802 26084594 ~ 26084835 (+)
G160746 NA non-coding upstream 353666 25993720 ~ 25993971 (+)
G160732 NA non-coding upstream 400630 25946795 ~ 25947007 (+)
LOC111194781 NA non-coding upstream 504700 25838438 ~ 25842937 (+)
G160654 NA non-coding upstream 608276 25738787 ~ 25739361 (+)
G160804 NA non-coding downstream 14510 26364104 ~ 26364360 (+)
G160805 LOC108431224,LOC107714781,LOC107715224 non-coding downstream 20055 26369649 ~ 26369877 (+)
G160806 NA non-coding downstream 20628 26370222 ~ 26370440 (+)
G160815 NA non-coding downstream 65279 26414873 ~ 26415185 (+)
G160807 NA non-coding downstream 85045 26434639 ~ 26440371 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other upstream 1955 26323820 ~ 26345682 (+)
G160306 NA other upstream 2227812 24119129 ~ 24119825 (+)
G160134 NA other upstream 3493556 22853412 ~ 22854081 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 4194852 22147844 ~ 22152785 (+)
fam174b NA other upstream 5273064 21060656 ~ 21074573 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 267668 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 555650 26905244 ~ 26907627 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other downstream 760077 27109671 ~ 27119264 (+)
c18h3orf33 NA other downstream 1435302 27784896 ~ 27796504 (+)
G161292 rap2b,LOC107757383 other downstream 2272534 28622128 ~ 28624785 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G183119 LOC106561179 non-coding NC_048566.1 CM023220.2 74018173 ~ 74034081 (+)