LOC103037634


Basic Information

Item Value
gene id LOC103037634
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 26342351 ~ 26345709 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU217949
TTGACGCTAGGGGCTGCTGCGTTGTCAGTCCCTAGAAGAGACGAGCGACTGGAAAGCGAACGGTTCTCGGTggggagaagaaaagaaagcgGCCCTTTGGGTGAGCTTATCTGGAAACGAGAGGAAGCGATACAATGACGAggGGAAATCAGCGTGAGCTTGCCCGCCAGAAAAATGCCAAAAAGCAAACTGACCAGTCCAAGGGCAAAAGAAATGAGGATGGTTTGTCTGCTGCTGCCAGGAAGCAGAGGGATGCTGAGATAATGCAACAGAAACAAAAGAAGTCCAATGAAAAATCTGACACAAAATCCAAGTAGCCTCCGAAGAACCAGAAGGAAGCCCTTCATACAAATATGATCCTCCAGTAAATGTTGTCATTGGTGTTATTAGGCTCCATTGggattctttttttgtgttctaGTTTCCAGCCTACAAAATGTTTATGTATGCTTTCTTTCAGgacattttatattgtatagcTTTAGAAAGACGAATCATTTCGAATGAGAATTGGGTTCTTTGCTTCTCCGCAGCGTGCAAGTCTCACTTTTCTTGATCagtatttacaatgtaaaaaaagcaaGAATTACAGACTGCTCAGAACCacaatcttgtattttttatacccCATCCCCCTTCACCTTTACTCAAAGTTACTGAATAAATTTTAGCTCTTAAGCTCAGACaagtttgtttttggtttttgagTATACGGTATACTGTTAGTGATACAAAGATGTCAGCTTGAGACACATTTGGATGCCAGTTAAACCTGTTTGGTGCTTCTTCTAAATGGAAACTTTGTTTATCCTCTTTGAACTCAGTATGAGTGGTTGAATAATGTGGCCTGCAGTGCTATATAGAATTATGAATTGGGTATTGATATCTGTAGATAAACTTGTTcggatggtgttttttttttttttttttttttttttaatctaaacctGTGGTTCTGCAGATTAGCCATTGCACAAATCTTtcaaaattaattttacaatgagcacataattaaaatgtaactgTAGTGTTGACAGAATGGTTAAAGGTCTGGCATGCTTAAGGCTGTAATTACTTACTGGTATTTGATTATGGTCAATTTGTGTTTTGAACACTTAACACTACTGTGATTAACTGTCTAGTTTCAATTACATAAACCAGGTT
>TU217950
TTGACGCTAGGGGCTGCTGCGTTGTCAGTCCCTAGAAGAGACGAGCGACTGGAAAGCGAACGGTTCTCGGTggggagaagaaaagaaagcgGCCCTTTGGGTGAGCTTATCTGGAAACGAGAGGAAGCGATACAATGACGAggGGAAATCAGCGTGAGCTTGCCCGCCAGAAAAATGCCAAAAAGCAAACTGACCAGTCCAAGGGCAAAAGAAATGAGGATGGTTTGTCTGCTGCTGCCAGGAAGCAGAGGGATGCTGAGATAATGCAACAGAAACAAAAGAAGTCCAATGAAAAATCTGACACAAAATCCAAGTAGCCTCCGAAGAACCAGAAGGAAGCCCTTCATACAAATATGATCCTCCAGTAAATGTTGTCATTGGTGTTATTAGGCTCCATTGggattctttttttgtgttctaGTTTCCAGCCTACAAAATGTTTATGTATGCTTTCTTTCAGgacattttatattgtatagcTTTAGAAAGACGAATCATTTCGAATGAGAATTGGGTTCTTTGCTTCTCCGCAGCGTGCAAGTCTCACTTTTCTTGATCagtatttacaatgtaaaaaaagcaaGAATTACAGACTGCTCAGAACCacaatcttgtattttttatacccCATCCCCCTTCACCTTTACTCAAAGTTACTGAATAAATTTTAGCTCTTAAGCTCAGACaagtttgtttttggtttttgagTATACGGTATACTGTTAGTGATACAAAGATGTCAGCTTGAGACACATTTGGATGCCAGTTAAACCTGTTTGGTGCTTCTTCTAAATGGAAACTTTGTTTATCCTCTTTGAACTCAGTATGAGTGGTTGAATAATGTGGCCTGCAGTGCTATATAGAATTATGAATTGGGTATTGATATCTGTAGATAAACTTGTTcggatggtgtttttttatctaaacctGTGGTTCTGCAGATTAGCCATTGCACAAATCTTtcaaaattaattttacaatgagcacataattaaaatgtaactgTAGTGTTGACAGAATGGTTAAAGGTCTGGCATGCTTAAGGCTGTAATTACTTACTGGTATTTGATTATGGTCAATTTGTGTTTTGAACACTTAACACTACTGTGATTAACTGTCTAGTTTCAATTACATAAACCAGGTT
>XM_007254484.3
GACGCTAGGGGCTGCTGCGTTGTCAGTCCCTAGAAGAGACGAGCGACTGGAAAGCGAACGGTTCTCGGTggggagaagaaaagaaagcgGCCCTTTGGGTGAGCTTATCTGGAAACGAGAGGAAGCGATACAATGACGAggGGAAATCAGCGTGAGCTTGCCCGCCAGAAAAATGCCAAAAAGCAAACTGACCAGTCCAAGGGCAAAAGAAATGAGGATGGTTTGTCTGCTGCTGCCAGGAAGCAGAGGGATGCTGAGATAATGCAACAGAAACAAAAGAAGTCCAATGAAAAATCTGACACAAAATCCAAGTAGCCTCCGAAGAACCAGAAGGAAGCCCTTCATACAAATATGATCCTCCAGTAAATGTTGTCATTGGTGTTATTAGGCTCCATTGggattctttttttgtgttctaGTTTCCAGCCTACAAAATGTTTATGTATGCTTTCTTTCAGgacattttatattgtatagcTTTAGAAAGACGAATCATTTCGAATGAGAATTGGGTTCTTTGCTTCTCCGCAGCGTGCAAGTCTCACTTTTCTTGATCagtatttacaatgtaaaaaaagcaaGAATTACAGACTGCTCAGAACCacaatcttgtattttttatacccCATCCCCCTTCACCTTTACTCAAAGTTACTGAATAAATTTTAGCTCTTAAGCTCAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU217949 True 1164 lncRNA 0.38 3 26342351 26345709
TU217950 False 1144 lncRNA 0.39 4 26342351 26345709
XM_007254484.3 False 683 mRNA 0.42 3 26342830 26345707

Neighbor

gene id symbol gene type direction distance location
znf710 znf710,LOC107714783,LOC107715226,LOC107551465 coding downstream 241076 26063575 ~ 26101275 (-)
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107690363,LOC108230026,LOC100708145 coding downstream 410524 25875240 ~ 25931827 (-)
ctsh ctsh,LOC106561173 coding downstream 469049 25864327 ~ 25873302 (-)
alpk3 NA coding downstream 679518 25644396 ~ 25662833 (-)
znf592 NA coding downstream 716412 25617017 ~ 25625939 (-)
LOC103035975 LOC107714781 coding upstream 3452 26349161 ~ 26426272 (-)
LOC103047806 NA coding upstream 455580 26801289 ~ 26806334 (-)
ptx3 NA coding upstream 559502 26905211 ~ 26917668 (-)
lekr1 NA coding upstream 790973 27136682 ~ 27296999 (-)
tiparp tiparp,LOC106613254 coding upstream 993700 27339409 ~ 27376737 (-)
G160800 sema4b,LOC107714785,LOC107691120,LOC107556264 non-coding downstream 23204 26314747 ~ 26319147 (-)
G160789 NA non-coding downstream 86436 26219683 ~ 26255915 (-)
G160756 idh2,idhp,LOC107714782,LOC103368556 non-coding downstream 278991 26046320 ~ 26063360 (-)
G160725 NA non-coding downstream 478961 25861561 ~ 25863390 (-)
G160727 NA non-coding downstream 498471 25840522 ~ 25843880 (-)
G160902 NA non-coding upstream 403701 26749410 ~ 26753381 (-)
G160939 NA non-coding upstream 521381 26867090 ~ 26910397 (-)
G160954 NA non-coding upstream 680162 27025871 ~ 27053687 (-)
G160966 NA non-coding upstream 719468 27065177 ~ 27065759 (-)
LOC103022684 NA non-coding upstream 735273 27080982 ~ 27088735 (-)
G160715 NA other downstream 602989 25738881 ~ 25739362 (-)
LOC103041696 NA other downstream 739639 25600660 ~ 25602712 (-)
G160566 NA other downstream 865504 25476094 ~ 25476847 (-)
LOC103024596 NA other downstream 964485 25366454 ~ 25377866 (-)
G160476 NA other downstream 1714431 24626998 ~ 24627920 (-)
G160979 ccnl1,ccnl1a,LOC107710830,LOC107684610,LOC107714439,LOC107691967,LOC107563513 other upstream 763998 27109707 ~ 27119253 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other upstream 1084232 27429941 ~ 27578918 (-)
LOC111194804 NA other upstream 2247791 28593500 ~ 28652947 (-)
LOC103037190 NA other upstream 2541202 28886911 ~ 28941387 (-)
G161711 NA other upstream 3969897 30315606 ~ 30325858 (-)

Expression


Co-expression Network