G160869


Basic Information

Item Value
gene id G160869
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 26769564 ~ 26814069 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU218005
TGACTGGCAGCTGctgctgctgctgctggtagcatttttttattatttaaagagaGCTAGCtatcaataaattaaaacaaataaaagtaaaccATTCTGTACGCTAAAATACAGATGCTTCACAGTGCAtgtagtgtatacacagtaactcaaaaatgaaagaaagggcctgtattgtacattttctttttccctGAGGTTAACTTATGATATTGTTAGGGGTTTATGTACAAAATAATCATAGTTAAatttattacaaacattttcCAACGTTCTTCATATGCCTCACTAGAACACGTTTTTAAGTACCTTCATTTGAAACAATAcgtttttgttactgttccttTTACACTGTGATATGTAAATAGACTATGTTTTGACTGGCTCTCCATTATTATGTCTTATTCAAAAAGCAGCCCATACTAAAGCAGCCCAACATCCcctgtttattgtattgtgaaTGAATGGTGCTACACTGCTTTAAACTGAAGATGTAAGACTTCACAAAAGAGAAAGTGAACTCTAATCAAGCTGGGGTGAGTTTCCCTAAACTGATCAGTCTCAGAAAATACAACAAACTCACGAAGGgcatgaaaagaaaataacCAAAAGTCAGTCCAGTATTATGGTatcactttctatgaatgtcatttcTATTAGACTCTGTAAACATGCACATAATCACACTTAACAAAGCATGCAATAATTacttttaaccactcatgaattaga

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218005 True 732 lncRNA 0.34 2 26769564 26814069

Neighbor

gene id symbol gene type direction distance location
sema4b sema4b,LOC107714785,LOC107556264,LOC107691120,LOC107715225 coding upstream 451176 26193982 ~ 26318388 (+)
idh2 idh2,LOC103368556 coding upstream 706250 26046342 ~ 26063314 (+)
ankrd34c ankrd34c,LOC103039005,LOC107691151,LOC107556256,LOC107715204,LOC107690404,LOC107551450 coding upstream 732864 26029799 ~ 26036700 (+)
blm NA coding upstream 905541 25845616 ~ 25864023 (+)
frmd5 frmd5,LOC108435336,LOC570903,LOC107562133,LOC107556247 coding upstream 931498 25689253 ~ 25838066 (+)
veph1 veph1,LOC106613251 coding downstream 39811 26853880 ~ 27052199 (+)
LOC103022175 LOC103022175,LOC108437972 coding downstream 274806 27088875 ~ 27103594 (+)
LOC111194784 LOC107688027,LOC107751101,LOC107570926,LOC107731862,LOC106579815,LOC106606817 coding downstream 388425 27202494 ~ 27203910 (+)
ssr3 ssr3,LOC107571207,LOC106581450 coding downstream 609441 27423510 ~ 27429781 (+)
slc33a1 slc33a1,LOC107711775,LOC107675614,LOC107748080 coding downstream 948322 27762391 ~ 27778466 (+)
G160851 NA non-coding upstream 194290 26568928 ~ 26575274 (+)
G160807 NA non-coding upstream 329193 26434639 ~ 26440371 (+)
G160815 NA non-coding upstream 354379 26414873 ~ 26415185 (+)
G160806 NA non-coding upstream 399124 26370222 ~ 26370440 (+)
G160805 LOC108431224,LOC107714781,LOC107715224 non-coding upstream 399687 26369649 ~ 26369877 (+)
G160913 NA non-coding downstream 52056 26866125 ~ 26866407 (+)
G160921 NA non-coding downstream 103199 26917268 ~ 26917645 (+)
G160993 NA non-coding downstream 357574 27171643 ~ 27171938 (+)
G160994 NA non-coding downstream 358975 27173044 ~ 27173343 (+)
LOC111194785 NA non-coding downstream 421788 27235857 ~ 27236813 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other upstream 14251 26617262 ~ 26755313 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other upstream 423882 26323820 ~ 26345682 (+)
G160306 NA other upstream 2649739 24119129 ~ 24119825 (+)
G160134 NA other upstream 3915483 22853412 ~ 22854081 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 4616779 22147844 ~ 22152785 (+)
G160919 ptx3 other downstream 91175 26905244 ~ 26907627 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other downstream 295602 27109671 ~ 27119264 (+)
c18h3orf33 NA other downstream 970827 27784896 ~ 27796504 (+)
G161292 rap2b,LOC107757383 other downstream 1808059 28622128 ~ 28624785 (+)
fam219b fam219b other downstream 1931627 28745696 ~ 28759007 (+)

Expression


Co-expression Network