G160921


Basic Information

Item Value
gene id G160921
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 26917268 ~ 26917645 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU218066
CCTCAGCCTGATCTCCCTCATTGATCTCGTTGTAGTAGGCGTCTGCGTAGTTCACCTCAATCTCATCCCCATAATTCTGAGCCCGGACCACCACACCGACTAAACCCACCAGACACACGGCCTGGAGAACCCTCCACAGTGGCATGctggctgtgtgagtgtgtaagcgtgtgtgtgagagagtattTGGGTTGAGTTTGATTGAGAGCGAGAGTGTGCTCTAAATGAATGGAGAGTGAATGTAGTTCTCTActttctctctatgtctctctctctctctctctcgactGGTCCTTTTTAAATGCTGAGCAATGTGTTGGCTGCGTTCCAGCATGTGCCGAGAGCTGAAGCTGAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218066 True 356 lncRNA 0.50 2 26917268 26917645

Neighbor

gene id symbol gene type direction distance location
LOC103030887 NA coding upstream 127515 26756582 ~ 26789753 (+)
sema4b sema4b,LOC107714785,LOC107556264,LOC107691120,LOC107715225 coding upstream 598880 26193982 ~ 26318388 (+)
idh2 idh2,LOC103368556 coding upstream 853954 26046342 ~ 26063314 (+)
ankrd34c ankrd34c,LOC103039005,LOC107691151,LOC107556256,LOC107715204,LOC107690404,LOC107551450 coding upstream 880568 26029799 ~ 26036700 (+)
blm NA coding upstream 1053245 25845616 ~ 25864023 (+)
LOC103022175 LOC103022175,LOC108437972 coding downstream 171230 27088875 ~ 27103594 (+)
LOC111194784 LOC107688027,LOC107751101,LOC107570926,LOC107731862,LOC106579815,LOC106606817 coding downstream 284849 27202494 ~ 27203910 (+)
ssr3 ssr3,LOC107571207,LOC106581450 coding downstream 505865 27423510 ~ 27429781 (+)
slc33a1 slc33a1,LOC107711775,LOC107675614,LOC107748080 coding downstream 844746 27762391 ~ 27778466 (+)
plch1 plch1 coding downstream 887418 27805063 ~ 27965690 (+)
G160913 NA non-coding upstream 50861 26866125 ~ 26866407 (+)
G160869 NA non-coding upstream 103199 26769564 ~ 26814069 (+)
G160851 NA non-coding upstream 341994 26568928 ~ 26575274 (+)
G160807 NA non-coding upstream 476897 26434639 ~ 26440371 (+)
G160815 NA non-coding upstream 502083 26414873 ~ 26415185 (+)
G160993 NA non-coding downstream 253998 27171643 ~ 27171938 (+)
G160994 NA non-coding downstream 255399 27173044 ~ 27173343 (+)
LOC111194785 NA non-coding downstream 318212 27235857 ~ 27236813 (+)
G161017 NA non-coding downstream 420482 27338127 ~ 27339174 (+)
G161060 NA non-coding downstream 483316 27400961 ~ 27401187 (+)
G160919 ptx3 other upstream 9641 26905244 ~ 26907627 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other upstream 161955 26617262 ~ 26755313 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other upstream 571586 26323820 ~ 26345682 (+)
G160306 NA other upstream 2797443 24119129 ~ 24119825 (+)
G160134 NA other upstream 4063187 22853412 ~ 22854081 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other downstream 192026 27109671 ~ 27119264 (+)
c18h3orf33 NA other downstream 867251 27784896 ~ 27796504 (+)
G161292 rap2b,LOC107757383 other downstream 1704483 28622128 ~ 28624785 (+)
fam219b fam219b other downstream 1828051 28745696 ~ 28759007 (+)
G161331 NA other downstream 2153175 29070820 ~ 29116795 (+)

Expression


Co-expression Network