LOC111194783 (LOC103022175)


Basic Information

Item Value
gene id LOC111194783
gene name LOC103022175
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 27097937 ~ 27106597 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU218106
aataaatcacatgataatacattttatcaatttcaggtttgggtcttctttaaaagataaaaatggctttgcatattccagaaaaatacaatgtgcCTGCATGTATAGGGATTTCTTGTCATAAATATccattatttgaacatgcagttagccatttctttaaaataaaaagttcttgagagaaaatcaaagaaattagtTGACtaacttttaaacatgctttttaattgttacatgagttttggtaacagAAAAAAGTTAACCATCTTCGGCTTAGAAACTTTGTAAAAAATCACgcaaagctgcctgagattgatCAGTATCTAAatatatagttaaatatatgttttcttaGATTCTgtgttaaaaaagataaaaaattaagtttaatttggaagagttacaacaaaaTCAATACAGttggaaacaaacaaacaaaaaagctataaaaagttaataaattCAGCctagaaattaataaataaataaaccaattacagtatgtatttgtacaattacaatataattccttccatttctgcatttatgtattattcaatgtatatatgtttgtattattgtatatatatatataaatccaaGTGTGTTCAAAGTTGGATCTATTCTGATATTCAGTCAGGCATATTTATGGCTCCATAATTCCTTTAACTGAGTTTTGACTGAGTAAGATTTTAACGTAGTACCCATACTGTCACTAAAGTACACATTCTCTGGACATTTTACAACCCTGTAGATTCTGTGTTTAAACCCCCCCCTAAACCCAGCTCTCCCACTGGCTGGTGTTtgttgccctctctctctccctctgtcatGTGGTATCACGGCCTGTAGTTTGTGCTTTGGCTGGAGCTTTGCTGTGCTGCTGGAGCAGGTGAAGGGATCCGGACTGCCCGTGCACTTTAGCCACGTCTTCCGCTGTCTCCCTCCACTTGGTTCTGAGTGAGAGGTCTGCACCGCTCTCCAGCAGAACGCTGAGGACCTGTAGATCACAAAGGCTGATGATGAAAACCGTACATCCATTGGTGGTTCTCAAATTTTCTTTTCAAGATGTCCCTATAGGCATACAGCATTGAACATCTCTTGCATCATTAAATATCCTACCATGCTATTTGGCAGACTGCAAAACTGAGCAGGCGCACAGATGCAGCGCTGTGCGCCCACCCGAGCCTCTGAGGTTGGCATCAGCCCCCCGATGGAGCAGGAGTCTCACACCCGGCTCATTGCCCACCATTACTGCTAGCTGTAGCGGAGTTACCCCACCACCACTGGCCCCTTCCACATCTGCCCCGTTATCCAGCAGGAGCTCCACCACATCTCCCCAGCCCCCGAAAACCGCCCAGTGGAGCGGCGTCCACCTGTGGAAGTCCTGCGGGTCAGGAGCAGCCAGGTGCTGCAGCAGCGCCCGTGCTGAGCCCAGGTTACCACTAGCTGCTGCCAGGTGCAGGGGGGTCTGACCACAGCTGGAGCGCACTTCATGGGACGCCCCCTTCTGGAGGAGGTACTCTGTGGTGTCGGTGTTGCTCCCCATGCAGGAGCGGTGCAGCGGGGTACAGCTGAAGAAGTCTCGGCAGTTCACCTCCATCTCTCCACCCTGCAGCAGAAATCTGAGCAGCGTCAGGTGGCCTCGGAAAGCAGCGTGGTGGGCAGCTGTCCAGCCATGAGGGTCTCTG
>XR_002651267.1
CTGTGCTGCTGGAGCAGGTGAAGGGATCCGGACTGCCCGTGCACTTTAGCCACGTCTTCCGCTGTCTCCCTCCACTTGGTTCTGAGTGAGAGGTCTGCACCGCTCTCCAGCAGAACGCTGAGGACCTGTAGATCACAAAGGCTGATGATGAAAACCGTACATCCATTGGTGGTTCTCAAATTTTCTTTTCAAGATGTCCCTATAGGCATACAGCATTGAACATCTCTTGCATCATTAAATATCCTACCATGCTATTTGGCAGACTGCAAAACTGAGCAGGCGCACAGATGCAGCGCTGTGCGCCCACCCGAGCCTCTGAGGTTGGCATCAGCCCCCCGATGGAGCAGGAGTCTCACACCCGGCTCATTGCCCACCATTACTGCTAGCTGTAGCGGAGTTACCCCACCACCACTGGCCCCTTCCACATCTGCCCCGTTATCCAGCAGGAGCTCCACCACATCTCCCCAGCCCCCGAAAACCGCCCAGTGGAGCGGCGTCCACCTGTGGAAGTCCTGCGGGTCAGGAGCAGCCAGGTGCTGCAGCAGCGCCCGTGCTGAGCCCAGGTTACCACTAGCTGCTGCCAGGTGCAGGGGGGTCTGACCACAGCTGGAGCGCACTTCATGGGACGCCCCCTTCTGGAGGAGGTACTCTGTGGTGTCGGTGTTGCTCCCCATGCAGGAGCGGTGCAGCGGGGTACAGCTGAAGAAGTCTCGGCAGTTCACCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218106 True 1691 lncRNA 0.44 4 27097937 27106597
XR_002651267.1 False 724 lncRNA 0.59 3 27098029 27103276

Neighbor

gene id symbol gene type direction distance location
ptx3 NA coding downstream 180269 26905211 ~ 26917668 (-)
LOC103047806 NA coding downstream 291603 26801289 ~ 26806334 (-)
LOC103035975 LOC107714781 coding downstream 671665 26349161 ~ 26426272 (-)
znf710 znf710,LOC107714783,LOC107715226,LOC107551465 coding downstream 996662 26063575 ~ 26101275 (-)
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107690363,LOC108230026,LOC100708145 coding downstream 1166110 25875240 ~ 25931827 (-)
lekr1 NA coding upstream 30085 27136682 ~ 27296999 (-)
tiparp tiparp,LOC106613254 coding upstream 232812 27339409 ~ 27376737 (-)
LOC107196896 NA coding upstream 313015 27419612 ~ 27420256 (-)
LOC103029583 LOC108437982,LOC108264139 coding upstream 587146 27693743 ~ 27704738 (-)
gmps gmps coding upstream 612457 27719054 ~ 27751937 (-)
LOC103022684 NA non-coding downstream 9202 27080982 ~ 27088735 (-)
G160966 NA non-coding downstream 32178 27065177 ~ 27065759 (-)
G160954 NA non-coding downstream 44250 27025871 ~ 27053687 (-)
G160939 NA non-coding downstream 187540 26867090 ~ 26910397 (-)
G160902 NA non-coding downstream 344556 26749410 ~ 26753381 (-)
G161024 NA non-coding upstream 28194 27134791 ~ 27135312 (-)
G161030 NA non-coding upstream 46849 27153446 ~ 27154186 (-)
G161038 NA non-coding upstream 64807 27171404 ~ 27171938 (-)
G161042 NA non-coding upstream 84868 27191465 ~ 27195197 (-)
G161057 NA non-coding upstream 261265 27367862 ~ 27384578 (-)
LOC103037634 NA other downstream 752228 26342351 ~ 26345709 (-)
G160715 NA other downstream 1358575 25738881 ~ 25739362 (-)
LOC103041696 NA other downstream 1495225 25600660 ~ 25602712 (-)
G160566 NA other downstream 1621090 25476094 ~ 25476847 (-)
LOC103024596 NA other downstream 1720071 25366454 ~ 25377866 (-)
G160979 ccnl1,ccnl1a,LOC107710830,LOC107684610,LOC107714439,LOC107691967,LOC107563513 other upstream 3110 27109707 ~ 27119253 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other upstream 323344 27429941 ~ 27578918 (-)
LOC111194804 NA other upstream 1486903 28593500 ~ 28652947 (-)
LOC103037190 NA other upstream 1780314 28886911 ~ 28941387 (-)
G161711 NA other upstream 3209009 30315606 ~ 30325858 (-)

Expression


Co-expression Network