CI01000012_10489814_10496226 (TLX1, TLX1.L)


Basic Information

Item Value
gene id CI01000012_10489814_10496226
gene name TLX1, TLX1.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 10489727 ~ 10496584 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_10489814_10496226.mRNA
AAATAAAAGAGGCGACAGGATGCACCCACACTTGAGAGGACAGACACACCATCCAGTGGCTATAGGGGAGGAGCAGCTTCCGCTGTCATGGATGTCAAGTCCACTATTAGACCGCAGATTGAATCCACATGGTGCCTGGAGTATGAAATGAGACTTCCCATGTGTTTGTGGGAGTGGGAGATTCAAACAATAAATCTGTACTCAAATTCAACCTGTGAGCGATCTGTCCTGCGTAGCCATCGCAAGCACTCCTCTGGCAATAAGCATTATGAAGGGCTGTGTTTACTACTTTATGTACTTGAAGCTGTCAGCAGCGGGGCTGTACGCTCTCGACTGCGCTCAGAGATGCAGCTGATGGAAGTGGCGCCAGTGAGCGCCGATGGATCAGATGTCAAGCATTACACAGGTAGACTGATACACCACAGACAGTTTGAACGTGCTGGTAAATCGGAAGAAACTAGGGTTCACGTGACGCTGGAGGTCAAAATAAAAGGTTGGTTGCTGTATGATAACTGGGGTGACGTGGAGGATCCTGTAGGCTCGCAGGAGCGCGCGCCTCTCCACACCATGGATCATATGGGAGCGCATCTCCACCATACGCACGCAGACACCATCAGTTTTGGGATCGATCAGATTCTTAACAATGCAGACCAGGGGAGCTGCATGATCTCCAACCCCAGAATGCAGGACCTGGACTACGGCTTGGGCTGCATAGTCAGCACAGCCTACAATACCATGACTGGCAACTACAGCGTAAATAACTCGGCTGGATACAATGGAAACTCGTGCAGCGTTGGTTCCCTCAACGGCTCGTACAACATGAACTTGGGCACGAATGTTAATGGGAATTGCCTTAATTCTTCGGGAGTGATCCGGGTTCCAGCGCACCGGCCGCTGAGCAGCGTTCACTCGTCCATTCCCACCAGCGCTTCCACGGTGCCAAGTATGGGAAGCATGGGCACCATTAACAATCTCACGGGATTAACGTTTCCATGGATGGAGAGTAACAGGAGATATACCAAAGACAGATTTACAGTGGCCCTCTCACCGTTCACTGTAACACGCCGTATAGGTCACCCGTATCAGAACCGAACCCCTCCGAAGAAGAAGAAGCCCCGAACGTCGTTCACGCGCCTCCAGATCTGTGAGCTTGAGAAACGCTTCCACCGTCAGAAGTATTTGGCGTCAGCTGAGAGGGCCGCCTTAGCGAAAGCACTTAAAATGACTGATGCGCAGGTCAAAACATGGTTCCAGAACAGAAGAACGAAATGGAGGCGGCAGACAGCGGAGGAGAGAGAAGCAGAGCGACAACAAGCGAACCGAATTCTTATGCAACTTCAACAAGAGGCTTTTCAAAAGACTATAAACCAACCTGTTACTCCGGACCCAATCTGCCTTCACAACAGCTCTCTGTTCGCACTTCAGAACCTCCAGCCCTGGACTGAGAACACGGCGAAAATCAGTAGCGTTCCCAACACTGATTAAGATGGGGAGACTTTTATGGACGTGGGATGTACAGAGGAATATCTCAACATCAGATTGTTTTCTTCTTTTTAACGTAAAATTAATCTTTCATTTGTAATATGCAACTTGTAAAAACAGTTAAAATACACTTGCCGCTCTCCGTTGCAGTCGTGCAGAATAATCTTTTTTTTTAGGCTAATTGATTTTATCTTTTCGTTTTCAAAATGCAACGATCAAAATGTAAGCATAAAAGCGTATATTTCGTTTGTACCTTAAACATTCATTTTATTTTGTACACTTCCATTAACCTAACGTTTTGTGGTAACACTTTAATAACTTTTAGCTATTAATAAGTTTAATAAGTCACAAAATATTACAA

Function

symbol description
tlx1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in animal organ development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in spleen. Human ortholog(s) of this gene implicated in adult T-cell leukemia. Orthologous to human TLX1 (T cell leukemia homeobox 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG:

id description
K09340 TLX1, HOX11; T-cell leukemia homeobox protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_10489814_10496226.mRNA True 1843 mRNA 0.47 5 10489727 10496584

Neighbor

gene id symbol gene type direction distance location
CI01000012_10469322_10470665 LBX1A, LBX1 coding upstream 18354 10468583 ~ 10471373 (+)
CI01000012_10296725_10299883 CYP17, CYP17A1 coding upstream 188172 10296628 ~ 10301555 (+)
CI01000012_10260457_10272063 NT5C2B, NT5C2, NT5C2A coding upstream 217465 10259735 ~ 10272262 (+)
CI01000012_10244843_10249396 NA coding upstream 240228 10244843 ~ 10249499 (+)
CI01000012_10223957_10235955 NA coding upstream 253451 10223697 ~ 10236276 (+)
CI01000012_10499885_10500843 SDHAF4 coding downstream 2631 10499215 ~ 10501778 (+)
CI01000012_10502102_10533782 NA coding downstream 5518 10502102 ~ 10533942 (+)
CI01000012_10572910_10604787 NA coding downstream 76246 10572830 ~ 10605280 (+)
CI01000012_10608607_10619833 NA coding downstream 112023 10608607 ~ 10620458 (+)
CI01000012_10661067_10678624 OGFRL1 coding downstream 164105 10660689 ~ 10679416 (+)
G75429 NA non-coding upstream 29340 10460088 ~ 10460387 (+)
G75356 NA non-coding upstream 168967 10320542 ~ 10320760 (+)
G75355 NA non-coding upstream 170442 10318993 ~ 10319285 (+)
G75349 NA non-coding upstream 196282 10293213 ~ 10293445 (+)
G75276 NA non-coding upstream 212724 10274665 ~ 10277003 (+)
G75442 NA non-coding downstream 22619 10519203 ~ 10520123 (+)
G75467 NA non-coding downstream 189433 10686017 ~ 10686254 (+)
G75468 NA non-coding downstream 189881 10686465 ~ 10686685 (+)
G75469 NA non-coding downstream 190103 10686687 ~ 10687042 (+)
G73578 NA other upstream 2122100 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 2681872 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 4565422 5922385 ~ 5929186 (+)
G71623 NA other upstream 4673122 5813517 ~ 5816605 (+)
G75533 NA other downstream 648233 11144817 ~ 11145739 (+)
G76385 NA other downstream 2134171 12630755 ~ 12675666 (+)
G76374 NA other downstream 2248947 12745531 ~ 12749169 (+)
CI01000012_13029637_13033226 RGS17 other downstream 2518922 13029435 ~ 13038899 (+)
G76645 NA other downstream 3155275 13651859 ~ 13652234 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006660 tlx1 coding NC_007124.7 CM002897.2 28267997 ~ 28272299 (-)
bowfin (Amia calva) AMCG00003344 tlx1,LOC107585374,LOC107588667,LOC107694453 coding CM030139.1 CM030139.1 20159328 ~ 20165583 (-)