G161017


Basic Information

Item Value
gene id G161017
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 27338127 ~ 27339174 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU218182
caacaaaaaagaatgtCAAAGCTTCAATGACGTCAAGCGCCAAGTCCATGTGATGGACCACCAGTGTCTCAAAGTTCAGAAGGGGGAGGGGCTTTCTCTGCAGAGTCACAAAATCACATATCCATACACGCCCAACAGCAGTCTGTTTAGAAGTGAAGATGGGTATGACCTGCATCCACATGGTCAGGGGCACGAGGAGACGGGCACTAAACGGTCTCTCAGACTCACAAACACATgttcccacacacactcactcacacacacacacacactcctaaaggccctgtcccactgcgattgcgtctaaatatccactaaagtacgtccaaatttatcagaaaacactgcgtccactgagtgaACGCGCTGCATCCAAAATATAGACGCACTGCGTCCAAATGGTCACGTCCATATTCCgtctaaattgaagttggacgCAGGAGAGGACTGTTCCTCGGGGGCTCGAGCTGGTTCCTCGGGAGCTGGAACTGCCTCCTCGGAAAATCCTTCCTCTTGGCTGGCATCTTGGAAAGTGTGGAAAAGCGATGGacgccagaaaaatatttttatggacttcg
>TU218183
ttgttacattaactaacataaataattttttatgaaCAAAAGGCACACTGTTCAaatataaacaagaaaacataTGTACAACTTCTCACAAATTAAGTATGGAGATGGCGGGGGGAGGGGCTTgagtctttaaaaaaagaaaaaaaaaaacaaaacaaaaaaaaaaacaaagaaacaacaaaaaagaatgtCAAAGCTTCAATGACGTCAAGCGCCAAGTCCATGTGATGGACCACCAGTGTCTCAAAGTTCAGAAGGGGGAGGGGCTTTCTCTGCAGAGTCACAAAATCACATATCCATACACGCCCAACAGCAGTCTGTTTAGAAGTGAAGATGGGTATGACCTGCATCCACATGGTCAGGGGCACGAGGAGACGGGCACTAAACGGTCTCTCAGACTCACAAACACATgttcccacacacactcactcacacacacacacacactcctaaaggccctgtcccactgcgattgcgtctaaatatccactaaagtacgtccaaatttatcagaaaacaATATTCCgtctaaattgaagttggacgccgacttccaaatttgtacgtcgacttccactctttggacgtcgacttccactttttggaagtcgacgtccactttttggacgtcgacttccaactatatatggttgttttttctagtgaatcatcatttcttcttgagctacaagagagagcacatctattctcttctacacaaccatggaccacagattccttgcagtgatggtgcagcagcagaacatactcctccatgtgctggaccagaccgggaggaggaggaggcggcagCAGGAGAGGACTGTTCCTCGGGGGCTCGAGCTGGTTCCTCGGGAGCTGGAACTGCCTCCTCGGAAAATCGCTTGGCGGCGGCCGTCTTAGCTGAACCCTTCCTCTTGGCTGGCATCTTGGAAAGTGTGGAAAAGCGATGGacgccagaaaaatatttttatggacttcg
>TU218184
ttgttacattaactaacataaataattttttatgaaCAAAAGGCACACTGTTCAaatataaacaagaaaacataTGTACAACTTCTCACAAATTAAGTATGGAGATGGCGGGGGGAGGGGCTTgagtctttaaaaaaagaaaaaaaaaaacaaaacaaaaaaaaaaacaaagaaacaacaaaaaagaatgtCAAAGCTTCAATGACGTCAAGCGCCAAGTCCATGTGATGGACCACCAGTGTCTCAAAGTTCAGAAGGGGGAGGGGCTTTCTCTGCAGAGTCACAAAATCACATATCCATACACGCCCAACAGCAGTCTGTTTAGAAGTGAAGATGGGTATGACCTGCATCCACATGGTCAGGGGCACGAGGAGACGGGCACTAAACGGTCTCTCAGACTCACAAACACATgttcccacacacactcactcacacacacacacacactcctaaaggccctgtcccactgcgattgcgtctaaatatccactaaagtacgtccaaatttatcagaaaacaATATTCCgtctaaattgaagttggacgccgacttccaaatttgtacgtcgacttccactctttggacgtcgacttccactttttggaagtcgacgtccactttttggacgtcgacttccaactatatatggttgttttttctagtgaatcatcatttcttcttgagctacaagagagagcacatctattctcttctacacaaccatggaccacagattccttgcagtgatggtgcagcagcagaacatactcctccatgtgctggaccagaccgggaggaggaggaggcggcagCAGGAGAGGACTGTTCCTCGGGGGCTCGAGCTGGTTCCTCGGGAGCTGGAACTGCCTCCTCGGAAAATCCTTCCTCTTGGCTGGCATCTTGGAAAGTGTGGAAAAGCGATGGacgccagaaaaatatttttatggacttcg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218182 False 578 lncRNA 0.49 3 27338302 27339174
TU218183 True 982 lncRNA 0.45 2 27338127 27339174
TU218184 False 954 lncRNA 0.44 3 27338127 27339174

Neighbor

gene id symbol gene type direction distance location
LOC111194784 LOC107688027,LOC107751101,LOC107570926,LOC107731862,LOC106579815,LOC106606817 coding upstream 134217 27202494 ~ 27203910 (+)
LOC103022175 LOC103022175,LOC108437972 coding upstream 234533 27088875 ~ 27103594 (+)
veph1 veph1,LOC106613251 coding upstream 285928 26853880 ~ 27052199 (+)
LOC103030887 NA coding upstream 548374 26756582 ~ 26789753 (+)
sema4b sema4b,LOC107714785,LOC107556264,LOC107691120,LOC107715225 coding upstream 1019739 26193982 ~ 26318388 (+)
ssr3 ssr3,LOC107571207,LOC106581450 coding downstream 84336 27423510 ~ 27429781 (+)
slc33a1 slc33a1,LOC107711775,LOC107675614,LOC107748080 coding downstream 423217 27762391 ~ 27778466 (+)
plch1 plch1 coding downstream 465889 27805063 ~ 27965690 (+)
LOC103040346 LOC108437990,LOC108263991,LOC108264138,LOC108264137 coding downstream 629884 27969058 ~ 27977682 (+)
LOC103045576 LOC108437981,LOC108264123 coding downstream 732317 28071491 ~ 28077732 (+)
LOC111194785 NA non-coding upstream 101314 27235857 ~ 27236813 (+)
G160994 NA non-coding upstream 164784 27173044 ~ 27173343 (+)
G160993 NA non-coding upstream 166189 27171643 ~ 27171938 (+)
G160921 NA non-coding upstream 420482 26917268 ~ 26917645 (+)
G160913 NA non-coding upstream 471720 26866125 ~ 26866407 (+)
G161060 NA non-coding downstream 61787 27400961 ~ 27401187 (+)
G161079 NA non-coding downstream 247355 27586529 ~ 27586770 (+)
G161080 NA non-coding downstream 263685 27602859 ~ 27627422 (+)
G161115 NA non-coding downstream 441680 27780854 ~ 27783189 (+)
G161129 NA non-coding downstream 553913 27893087 ~ 27893477 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 218863 27109671 ~ 27119264 (+)
G160919 ptx3 other upstream 430500 26905244 ~ 26907627 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other upstream 582814 26617262 ~ 26755313 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other upstream 992445 26323820 ~ 26345682 (+)
G160306 NA other upstream 3218302 24119129 ~ 24119825 (+)
c18h3orf33 NA other downstream 445722 27784896 ~ 27796504 (+)
G161292 rap2b,LOC107757383 other downstream 1282954 28622128 ~ 28624785 (+)
fam219b fam219b other downstream 1406522 28745696 ~ 28759007 (+)
G161331 NA other downstream 1731646 29070820 ~ 29116795 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 3014512 30353686 ~ 30414212 (+)

Expression


Co-expression Network