G161030


Basic Information

Item Value
gene id G161030
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 27153446 ~ 27154186 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU218201
CCATAACTATCTAGGAACATCCTAGCAGCTACTAAGCAACATCATGACATCTGCCTGAAATGCCATAGCAATCACCATAGCCACATAGACACACTGTAGCACCCATCTAATGTCTATTTAGCTacacactagcaaccacctaggataccatagcaTACAATAACTATCTAGGAACATCATATCAGCTACTAATCAACATCATGACATCTGCCTGAAATGCCATAGCAATCACCATAGCCACATAGACACACTGTAGCACACATCTAATGTCCATTTAGCTACACCCTAGTAACCACctagaatacCATAGCATACCATAACTACATCCTAGCAGCTACTAAGCAACGTTGTGACACGGCCTAAAATGCCATAGCAATCACCATAGACACATAGACACAC

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0007600 sensory perception biological_process
GO:0007606 sensory perception of chemical stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0003008 system process biological_process

KEGG:

id description
ko04740 Olfactory transduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU218201 True 399 lncRNA 0.42 2 27153446 27154186

Neighbor

gene id symbol gene type direction distance location
ptx3 NA coding downstream 235778 26905211 ~ 26917668 (-)
LOC103047806 NA coding downstream 347112 26801289 ~ 26806334 (-)
LOC103035975 LOC107714781 coding downstream 727174 26349161 ~ 26426272 (-)
znf710 znf710,LOC107714783,LOC107715226,LOC107551465 coding downstream 1052171 26063575 ~ 26101275 (-)
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107690363,LOC108230026,LOC100708145 coding downstream 1221619 25875240 ~ 25931827 (-)
tiparp tiparp,LOC106613254 coding upstream 185223 27339409 ~ 27376737 (-)
LOC107196896 NA coding upstream 265426 27419612 ~ 27420256 (-)
LOC103029583 LOC108437982,LOC108264139 coding upstream 539557 27693743 ~ 27704738 (-)
gmps gmps coding upstream 564868 27719054 ~ 27751937 (-)
LOC103046178 LOC108437989,LOC108263992,LOC108434102,LOC108263974 coding upstream 830177 27984363 ~ 27988762 (-)
G161024 NA non-coding downstream 18134 27134791 ~ 27135312 (-)
LOC103022483 NA non-coding downstream 45175 27105519 ~ 27108271 (-)
LOC111194783 LOC103022175 non-coding downstream 46849 27097937 ~ 27106597 (-)
LOC103022684 NA non-coding downstream 64711 27080982 ~ 27088735 (-)
G160966 NA non-coding downstream 87687 27065177 ~ 27065759 (-)
G161038 NA non-coding upstream 17218 27171404 ~ 27171938 (-)
G161042 NA non-coding upstream 37279 27191465 ~ 27195197 (-)
G161057 NA non-coding upstream 213676 27367862 ~ 27384578 (-)
G161062 NA non-coding upstream 253886 27408072 ~ 27408334 (-)
G161065 NA non-coding upstream 256302 27410488 ~ 27410708 (-)
G160979 ccnl1,ccnl1a,LOC107710830,LOC107684610,LOC107714439,LOC107691967,LOC107563513 other downstream 34193 27109707 ~ 27119253 (-)
LOC103037634 NA other downstream 807737 26342351 ~ 26345709 (-)
G160715 NA other downstream 1414084 25738881 ~ 25739362 (-)
LOC103041696 NA other downstream 1550734 25600660 ~ 25602712 (-)
G160566 NA other downstream 1676599 25476094 ~ 25476847 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other upstream 275755 27429941 ~ 27578918 (-)
LOC111194804 NA other upstream 1439314 28593500 ~ 28652947 (-)
LOC103037190 NA other upstream 1732725 28886911 ~ 28941387 (-)
G161711 NA other upstream 3161420 30315606 ~ 30325858 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other upstream 3544984 30699170 ~ 30781708 (-)

Expression


Co-expression Network