G161038


Basic Information

Item Value
gene id G161038
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 27171404 ~ 27171938 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU218209
taaacccatagactgtatatagctggacagagcatcgtctcttaaaagtgaagccaccacaggtcgggcgccccctgctgttcggctgcagaaagctgtgtaactccacccatccccataggtttcaatggcaaaacagaaaactttcaatcacgtttttttctaatatactgtaattctacctcctttatttaaatgtaacagctagtgtaacctctgcttatattgtcaaatttttatatccccacagaattcggtttttaaaacgttattcggctctattcaaaaaaggtgtggttatggtaaaagggctgcttatgggcgggaccaataacagactgtcagctccgctccgccccgctctgcagtctgtgaccgcgaggcagccctcaggggcggggttatttaaatgagtaggcggtctctccacagcctttctccctcctctggtctcttctgcgcagactctggtctctgaatcgccaaaatggaggaagattttggcttcattttcattgaatgaatgggaacggcg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218209 True 535 lncRNA 0.46 1 27171404 27171938

Neighbor

gene id symbol gene type direction distance location
ptx3 NA coding downstream 253736 26905211 ~ 26917668 (-)
LOC103047806 NA coding downstream 365070 26801289 ~ 26806334 (-)
LOC103035975 LOC107714781 coding downstream 745132 26349161 ~ 26426272 (-)
znf710 znf710,LOC107714783,LOC107715226,LOC107551465 coding downstream 1070129 26063575 ~ 26101275 (-)
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107690363,LOC108230026,LOC100708145 coding downstream 1239577 25875240 ~ 25931827 (-)
tiparp tiparp,LOC106613254 coding upstream 167471 27339409 ~ 27376737 (-)
LOC107196896 NA coding upstream 247674 27419612 ~ 27420256 (-)
LOC103029583 LOC108437982,LOC108264139 coding upstream 521805 27693743 ~ 27704738 (-)
gmps gmps coding upstream 547116 27719054 ~ 27751937 (-)
LOC103046178 LOC108437989,LOC108263992,LOC108434102,LOC108263974 coding upstream 812425 27984363 ~ 27988762 (-)
G161030 NA non-coding downstream 17218 27153446 ~ 27154186 (-)
G161024 NA non-coding downstream 36092 27134791 ~ 27135312 (-)
LOC103022483 NA non-coding downstream 63133 27105519 ~ 27108271 (-)
LOC111194783 LOC103022175 non-coding downstream 64807 27097937 ~ 27106597 (-)
LOC103022684 NA non-coding downstream 82669 27080982 ~ 27088735 (-)
G161042 NA non-coding upstream 19527 27191465 ~ 27195197 (-)
G161057 NA non-coding upstream 195924 27367862 ~ 27384578 (-)
G161062 NA non-coding upstream 236134 27408072 ~ 27408334 (-)
G161065 NA non-coding upstream 238550 27410488 ~ 27410708 (-)
LOC111194786 NA non-coding upstream 248548 27420486 ~ 27421684 (-)
G160979 ccnl1,ccnl1a,LOC107710830,LOC107684610,LOC107714439,LOC107691967,LOC107563513 other downstream 52151 27109707 ~ 27119253 (-)
LOC103037634 NA other downstream 825695 26342351 ~ 26345709 (-)
G160715 NA other downstream 1432042 25738881 ~ 25739362 (-)
LOC103041696 NA other downstream 1568692 25600660 ~ 25602712 (-)
G160566 NA other downstream 1694557 25476094 ~ 25476847 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other upstream 258003 27429941 ~ 27578918 (-)
LOC111194804 NA other upstream 1421562 28593500 ~ 28652947 (-)
LOC103037190 NA other upstream 1714973 28886911 ~ 28941387 (-)
G161711 NA other upstream 3143668 30315606 ~ 30325858 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other upstream 3527232 30699170 ~ 30781708 (-)

Expression


Co-expression Network