G161042


Basic Information

Item Value
gene id G161042
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 27191465 ~ 27195197 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU218213
ATGAGGACTAAATGCATGtgagaaacaaacacaaacaaggaCTAAACGCACGTGAGAACTAAGCGCATGTGAAAACAAATGCACACAACGACTAAATGCATGTGACAAATAAACGAATGCAAGAAACAAACGCACACAAGCACTAAACGCAtgtaagaaataaatgcttGCGAGAAACAAACACATGCAAGAACTAAACGCACACTAGAACAAAATGCATGCAAGAATcaaatgcatgtaaaaaataaacacatgcgAAAAACAAATGCACACAAGAACTTAACGCACACTAGAACAAAATGCATGCAAGAGTCAAATGCATGCAAGAATCAAATGCATGTGAGAACTAAACACACATGAGGACTAAAAACATGCGAGAATTAAATGCACACAAAAATTAAACACATATGAGGACAAGACACATGCGTGGACTAAATGCACGTTGTAACGCGagatgagacgggaggcggacgtttaaacgggtaagacatgacttttaataaataacaaataaacaaataaacaaacaagggaataacgaatataaatatgtacataaacaaacagggaaaacaaacaaagagctaaactaaacagacaagtacaaaacagggctagggatatatatacagggaataatacgtaaatatatacaagatacacaaaggaaacaaacaggaaCCAAACGTGActagaatataaacaagagcgaGAAACTACAAACAACCAAAGAACGAGAACTAGAGCAATAACgtaaacgtggcgagacagacaacaggggaaggtgcaaagaccgacagcaaacgtagactaacaagtactatttatactaaacatgaaacacagaacacctgggaaggggcggagttacaaattagacacacgtaatggaaaatAACAGTGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218213 True 906 lncRNA 0.37 2 27191465 27195197

Neighbor

gene id symbol gene type direction distance location
ptx3 NA coding downstream 273797 26905211 ~ 26917668 (-)
LOC103047806 NA coding downstream 385131 26801289 ~ 26806334 (-)
LOC103035975 LOC107714781 coding downstream 765193 26349161 ~ 26426272 (-)
znf710 znf710,LOC107714783,LOC107715226,LOC107551465 coding downstream 1090190 26063575 ~ 26101275 (-)
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107690363,LOC108230026,LOC100708145 coding downstream 1259638 25875240 ~ 25931827 (-)
tiparp tiparp,LOC106613254 coding upstream 144212 27339409 ~ 27376737 (-)
LOC107196896 NA coding upstream 224415 27419612 ~ 27420256 (-)
LOC103029583 LOC108437982,LOC108264139 coding upstream 498546 27693743 ~ 27704738 (-)
gmps gmps coding upstream 523857 27719054 ~ 27751937 (-)
LOC103046178 LOC108437989,LOC108263992,LOC108434102,LOC108263974 coding upstream 789166 27984363 ~ 27988762 (-)
G161038 NA non-coding downstream 19527 27171404 ~ 27171938 (-)
G161030 NA non-coding downstream 37279 27153446 ~ 27154186 (-)
G161024 NA non-coding downstream 56153 27134791 ~ 27135312 (-)
LOC103022483 NA non-coding downstream 83194 27105519 ~ 27108271 (-)
LOC111194783 LOC103022175 non-coding downstream 84868 27097937 ~ 27106597 (-)
G161057 NA non-coding upstream 172665 27367862 ~ 27384578 (-)
G161062 NA non-coding upstream 212875 27408072 ~ 27408334 (-)
G161065 NA non-coding upstream 215291 27410488 ~ 27410708 (-)
LOC111194786 NA non-coding upstream 225289 27420486 ~ 27421684 (-)
G161136 NA non-coding upstream 497238 27692435 ~ 27703228 (-)
G160979 ccnl1,ccnl1a,LOC107710830,LOC107684610,LOC107714439,LOC107691967,LOC107563513 other downstream 72212 27109707 ~ 27119253 (-)
LOC103037634 NA other downstream 845756 26342351 ~ 26345709 (-)
G160715 NA other downstream 1452103 25738881 ~ 25739362 (-)
LOC103041696 NA other downstream 1588753 25600660 ~ 25602712 (-)
G160566 NA other downstream 1714618 25476094 ~ 25476847 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other upstream 234744 27429941 ~ 27578918 (-)
LOC111194804 NA other upstream 1398303 28593500 ~ 28652947 (-)
LOC103037190 NA other upstream 1691714 28886911 ~ 28941387 (-)
G161711 NA other upstream 3120409 30315606 ~ 30325858 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other upstream 3503973 30699170 ~ 30781708 (-)

Expression


Co-expression Network