CI01000012_10499885_10500843 (SDHAF4)


Basic Information

Item Value
gene id CI01000012_10499885_10500843
gene name SDHAF4
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 10499215 ~ 10501778 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_10499885_10500843.mRNA
CTATATAAAATGGTAAATATTTTGAAATGTATTAGAACCAACTGCTATAACATGCATAGTGCACTTCCCAATTGTCGCAAGTTATTATGAACTTTTAGACTCACGTATTATTTTCATATTGTAATTTAGACGTTATGTCTGAGATATAGCTAATTGATAATATACAAATTACAATTAACCTACGTAGCCTATATAGGCTAGACAAGAAAAGTGATTAGTTTTATTAGGCCTATTTTTATATAGGATCCTGAAATAGAATGTACATAGGCCTAGATGTACAAACATGAAATAGTTTATGTACATTTCAAAACTGTATTGCAGATCTGATTCAAAGTAGCATATGATGCAGTAGCCTACGGTTTTGTTTTGTTTTTGTATTACAATGCAATTAAAGGGATAGATCACTTAAAAATTAAAATTGTATCCCTTTAAGAAAATCCACGTCACATTACATAATATATTTTTACTTCATACAATTTGTCCATTTATAAAATGTCCATTTATGTTTGTATATATGCAATCAGACCTTAAAAACTTTAATAGCTATGACTCATATACCATCACAAAAAGTAAGTTTGTTTGTACTTTTTGAGTATGTTCTGTAACAGCCTATTTTGGCACTTCATTTCACTCTCTCACGGGAATCGTAGTATCGCTTCGGGGAAAAACCATGGGAAAAACGCATGAAAAGCAGATGCATATCCATAACTGCACTTCTTTAGCGCCGCCGCGACCATCTCGAGTGTATTTTCTGTCCCTCAATGATGACGCACGCTACGTCATTTTCTGTCGACAAAACATTCTTCAGTTGTGTAATTTTCTGCAGAGACAAGCGAAAAGTTCACAACAGATTACATGTCATAGCAGGACAGCAGGATATGCATCTGGTGGGGTGACCAAAGATAAAGAACCTTTAAAGAAAGCGAAGACGCCCCAAGGACGCTTTGACATGGACGAAAATGAGGCCAAATCTAAAGATGTCCTTACAAGATTTCCAGATGATGTGAATCCAGAAACTAAGGAGAAAGGTGGTCCCAGAGGCCCTGAACCTACACGATATGGTGACTGGGAAAGGAAGGGTCGTTGTATTGATTTTTAGATTGGCCTGTTAAAATATTCAAATTTATTTATTTTACCATTTGAGTCATTTGATTTTAATTAGTAAATCTGTATACAGATATAAATAAGAGAATTTCTGGACCAGAAATGATGTATGTCTCCCCTGATTGTATGGGCTTTCTATGTAGAATGTATACTATGTGTGTAACTACTTGAACTGATCTGTTTAGTATTGTCTGAAGGGTCTCTTAGAAGA
>TU86001
GTCGACAAAACATTCTTCAGTTGTGTAATTTTCTGCAGAGACAAGCGAAAAGTTCACAACAGATTAGTACAGCGTTTCACGCAAAATGTCTCTTTTACGTGTTTGCTGTACGACAGCTAGAGGTTTTGTAAAGAGAGGATTGTTTTCAGAGTCGACTTATCCTGCATGTCATAGCAGGACAGCAGGATATGCATCTGGTGGGGTGACCAAAGATAAAGAACCTTTAAAGAAAGCGAAGACGCCCCAAGGACGCTTTGACATGGACGAAAATGAGGCCAAATCTAAAGATGTCCTTACAAGATTTCCAGATGATGTGAATCCAGAAACTAAGGAGAAAGGTGGTCCCAGAGGCCCTGAACCTACACGATATGGTGACTGGGAAAGGAAGGGTCGTTGTATTGATTTTTAGATTGGCCTGTTAAAATATTCAAATTTATTTATTTTACCATTTGAGTCATTTGATTTTAATTAGTAAATCTGTATACAGATATAAATAAGAGAATTTCTGGACCAGAAATGATGTATGTCTCCCCTGATTGTATGGGCTTTCTATGTAGAATGTATACTATGTGTGTAACTACTTGAACTGATCTGTTTAGTATTGTCTGAAGGGTCTCTTAGAAGAATAAACATATTCAACCCTAAAATGTAATAAAAAATTCTTTTTTCACATTTCAAACATTTAAGTTTTGTCACAAGGACATTTATGTGTTTGGTATCATGTAGTCATAGTTATTACTGCAATAGTTTCCTTATGTATTTGCACATGAATTGTTATGGCTAGGCAGTAGCAGTACCATATCAGCCTTTAAGCAGAGAGGGGTTAAAAGCATTATCAGGGCACAACAGCGAGGCTGGGAGAGGTAGCCTGATCAGCGTTTAAATCTACTAATAACTCTGCAAAAACTACAAAACTGAACAGTGGTAGTTTGGCTGACATGTTGCAGGGGATACTTCTAGAAGGCACATTCAACAAAAATTTTTGCTTTGCTATGTTGCTGTCCCATGTATTTTTATTTAAAGAGAGACGGATAAACTACCATCATGAAAAAAACTAACAGCATGAAAAATAGCTATTTTGTTTTAACATACTGAATGCCTGTATTCCCCTTAAAATAGGGATTTTGGCCTGTACCATATTAAAGATCTTGTTAGATTGTATTTAAATATTAAAACCATACAGCAATG
>TU86004
GTCGACAAAACATTCTTCAGTTGTGTAATTTTCTGCAGAGACAAGCGAAAAGTTCACAACAGATTAGTACAGCGTTTCACGCAAAATGTCTCTTTTACGTGTTTGCTGTACGACAGCTAGAGGTTTTGTAAAGAGAGGATTGTTTTCAGAGTCGACTTATCCTGCATGTCATAGCAGGACAGCAGGATATGCATCTGGTGGGGTGACCAAAGATAAAGAACCTTTAAAGAAAGCGAAGACGCCCCAAGGACGCTTTGACATGGACGAAAATGAGGCCAAATCTAAAGATGTCCTTACAAGATTTCCAGATGATGTGAATCCAGAAACTAAGGAGAAAGGTGGTCCCAGAGGCCCTGAACCTACACGATATGGTGACTGGGAAAGGAAGGGTCGTTGTATTGATTTTTAGATTGGCCTGTTAAAATATTCAAATTTATTTATTTTACCATTTGAGTCATTTGATTTTAATTAGTAAATCTGTATACAGATATAAATAAGAGAATTTCTGGACCAGAAATGATGTATGTCTCCCCTGATTGTATGGGCTTTCTATGTAGAATGTATACTATGTGTGTAACTACTTGAACTGATCTGTTTAGTATTGTCTGAAGGGTCTCTTAGAAGAATAAACATATTCAACCCTAAAATGTAATAAAAAATTCTTTTTTCACATTTCAAACATTTAAGTTTTGTCACAAGGACATTTATGTGTTTGGTATCATGTAGTCATAGTTATTACTGCAATAGTTTCCTTATGTATTTGCACATGAATTGTTATGGCTAGGCAGTAGCAGTACCATATCAGCCTTTAAGCAGAGAGGGGTTAAAAGCATTATCAGGGCACAACAGCGAGGCTGGGAGAGGTAGCCTGATCAGCGTTTAAATCTACTAATAACTCTGCAAAAACTACAAAACTGAACAGTGGTAGTTTGGCTGACATGTTGCAGGGGATACTTCTAGAAGGCACATTCAACAAAAATTTTTGCTTTGCTATGTTGCTGTCCCATGTATTTTTATTTAAAGAGAGACGGATAAACTACCATCATGAAAAAAACTAACAGCATGAAAAATAGCTATTTTGTTTTAACATACTGAATGCCTGTATTCCCCTTAAAATAGGGATTTTGGCCTGTACCATATTAAAGATCTTGTTAGATTGTATTTAAATATTAAAACCATACAGCAATGATATAATTTTGACAATATTTTTCAATTTATTTTTTATTTGATACATTTTGTCTAGATAATTTTGATGTTTATTTATAGTTTGTTGTTAGAAATTGGAATGGTTTAAGAATTTAGTGTTTATTGTTTCATTTGTAATAAATGTATTATTTATTTAAA
>TU86005
GTCGACAAAACATTCTTCAGTTGTGTAATTTTCTGCAGAGACAAGCGAAAAGTTCACAACAGATTAGTACAGCGTTTCACGCAAAATGTCTCTTTTACGTGTTTGCTGTACGACAGCTAGAGGTTTTGTAAAGAGAGGATTGTTTTCAGAGTCGACTTATCCTGCATGTCATAGCAGGACAGCAGGATATGCATCTGGTGGGGTGACCAAAGATAAAGAACCTTTAAAGAAAGCGAAGACGCCCCAAGGACGCTTTGACATGGACGAAAATGAGGCCAAATCTAAAGATGTCCTTACAAGATTTCCAGATGATGTGAATCCAGAAACTAAGGAGAAAGGTGGTCCCAGAGGCCCTGAACCTACACGATATGGTGACTGGGAAAGGAAGGGTCGTTGTATTGATTTTTAGATTGGCCTGTTAAAATATTCAAATTTATTTATTTTACCATTTGAGTCATTTGATTTTAATTAGTAAATCTGTATACAGATATAAATAAGAGAATTTCTGGACCAGAAATGATGTATGTCTCCCCTGATTGTATGGGCTTTCTATGTAGAATGTATACTATGTGTGTAACTACTTGAACTGATCTGTTTAGTATTGTCTGAAGGGTCTCTTAGAAGAATAAACATATTCAACCCTAAAATGTAATAAAAAATTCTTTTTTCACATTTCAAACATTTAAGTTTTGTCACAAGGACATTTATGTGTTTGGTATCATGTAGTCATAGTTATTACTGCAATAGTTTCCTTATGTATTTGCACATGAATTGTTATGGCTAGGCAGTAGCAGTACCATATCAGCCTTTAAGCAGAGAGGGGTTAAAAGCATTATCAGGGCACAACAGCGAGGCTGGGAGAGGTAGCCTGATCAGCGTTTAAATCTACTAATAACTCTGCAAAAACTACAAAACTGAACAGTGGTAGTTTGGCTGACATGTTGCAGGGGATACTTCTAGAAGGCACATTCAACAAAAATTTTTGCTTTGCTATGTTGCTGTCCCATGTATTTTTATTTAAAGAGAGACGGATAAACTACCATCATGAAAAAAACTAACAGCATGAAAAATAGCTATTTTGTTTTAACATACTGAATGCCTGTATTCCCCTTAAAATAGGGATTTTGGCCTGTACCATATTAAAGATCTTGTTAGATTGTATTTAAATATTAAAACCATACAGCAATGATATAATTTTGACAATATTTTTCAATTTATTTTTTATTTGATACATTTTGTCTAGATAATTTTGATGTTTATTTATAGTTTGTTGTTAGAAATTGGAATGGTTTAA

Function

symbol description
sdhaf4 Predicted to be involved in mitochondrial respiratory chain complex II assembly. Predicted to be active in mitochondrion. Orthologous to human SDHAF4 (succinate dehydrogenase complex assembly factor 4).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_10499885_10500843.mRNA False 1315 mRNA 0.35 3 10499215 10501059
TU86001 False 1188 lncRNA 0.36 3 10500003 10501622
TU86004 False 1344 lncRNA 0.34 3 10500003 10501778
TU86005 True 1294 lncRNA 0.35 3 10500003 10501728

Neighbor

gene id symbol gene type direction distance location
CI01000012_10489814_10496226 TLX1, TLX1.L coding upstream 2631 10489727 ~ 10496584 (+)
CI01000012_10469322_10470665 LBX1A, LBX1 coding upstream 27842 10468583 ~ 10471373 (+)
CI01000012_10296725_10299883 CYP17, CYP17A1 coding upstream 197660 10296628 ~ 10301555 (+)
CI01000012_10260457_10272063 NT5C2B, NT5C2, NT5C2A coding upstream 226953 10259735 ~ 10272262 (+)
CI01000012_10244843_10249396 NA coding upstream 249716 10244843 ~ 10249499 (+)
CI01000012_10502102_10533782 NA coding downstream 1043 10502102 ~ 10533942 (+)
CI01000012_10572910_10604787 NA coding downstream 71771 10572830 ~ 10605280 (+)
CI01000012_10608607_10619833 NA coding downstream 107548 10608607 ~ 10620458 (+)
CI01000012_10661067_10678624 OGFRL1 coding downstream 159630 10660689 ~ 10679416 (+)
CI01000012_10714254_10788932 NA coding downstream 213195 10714254 ~ 10788932 (+)
G75429 NA non-coding upstream 38828 10460088 ~ 10460387 (+)
G75356 NA non-coding upstream 178455 10320542 ~ 10320760 (+)
G75355 NA non-coding upstream 179930 10318993 ~ 10319285 (+)
G75349 NA non-coding upstream 205770 10293213 ~ 10293445 (+)
G75276 NA non-coding upstream 222212 10274665 ~ 10277003 (+)
G75442 NA non-coding downstream 18144 10519203 ~ 10520123 (+)
G75467 NA non-coding downstream 184958 10686017 ~ 10686254 (+)
G75468 NA non-coding downstream 185406 10686465 ~ 10686685 (+)
G75469 NA non-coding downstream 185628 10686687 ~ 10687042 (+)
G75470 NA non-coding downstream 186183 10687242 ~ 10687474 (+)
CI01000012_10223957_10235955 NA other upstream 274928 10223697 ~ 10236276 (+)
G73578 NA other upstream 2131588 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 2691360 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 4574910 5922385 ~ 5929186 (+)
G71623 NA other upstream 4682610 5813517 ~ 5816605 (+)
G75533 NA other downstream 643758 11144817 ~ 11145739 (+)
G76385 NA other downstream 2129696 12630755 ~ 12675666 (+)
G76374 NA other downstream 2244472 12745531 ~ 12749169 (+)
CI01000012_13029637_13033226 RGS17 other downstream 2514447 13029435 ~ 13038899 (+)
G76645 NA other downstream 3150800 13651859 ~ 13652234 (+)

Expression


Co-expression Network