G161080


Basic Information

Item Value
gene id G161080
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 27602859 ~ 27627422 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU218251
acatattcggtctctttccagcttctgccagagtgtctgtatgttagtttgtaaagaatgaaccagtagtccttgtagaactgttagagctaaagggtggaaagcaggtcgcagttctcgcgagcgttggtcgcggccacctcggaaaacttacagagtctgggcacagacacgagagcaccgctattcctcctattacacctcaatgcagtgctgcagtgagtttcaagctgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218251 True 234 lncRNA 0.49 3 27602859 27627422

Neighbor

gene id symbol gene type direction distance location
ssr3 ssr3,LOC107571207,LOC106581450 coding upstream 173078 27423510 ~ 27429781 (+)
LOC111194784 LOC107688027,LOC107751101,LOC107570926,LOC107731862,LOC106579815,LOC106606817 coding upstream 398949 27202494 ~ 27203910 (+)
LOC103022175 LOC103022175,LOC108437972 coding upstream 499265 27088875 ~ 27103594 (+)
veph1 veph1,LOC106613251 coding upstream 550660 26853880 ~ 27052199 (+)
LOC103030887 NA coding upstream 813106 26756582 ~ 26789753 (+)
slc33a1 slc33a1,LOC107711775,LOC107675614,LOC107748080 coding downstream 134969 27762391 ~ 27778466 (+)
plch1 plch1 coding downstream 177641 27805063 ~ 27965690 (+)
LOC103040346 LOC108437990,LOC108263991,LOC108264138,LOC108264137 coding downstream 341636 27969058 ~ 27977682 (+)
LOC103045576 LOC108437981,LOC108264123 coding downstream 444069 28071491 ~ 28077732 (+)
LOC107196882 LOC108434085,LOC108264118,LOC108434032 coding downstream 546188 28173610 ~ 28177986 (+)
G161079 NA non-coding upstream 16089 27586529 ~ 27586770 (+)
G161060 NA non-coding upstream 201672 27400961 ~ 27401187 (+)
G161017 NA non-coding upstream 263685 27338127 ~ 27339174 (+)
LOC111194785 NA non-coding upstream 366046 27235857 ~ 27236813 (+)
G160994 NA non-coding upstream 429516 27173044 ~ 27173343 (+)
G161115 NA non-coding downstream 153432 27780854 ~ 27783189 (+)
G161129 NA non-coding downstream 265665 27893087 ~ 27893477 (+)
LOC111194734 NA non-coding downstream 403191 28030613 ~ 28035195 (+)
G161243 NA non-coding downstream 738746 28366168 ~ 28394028 (+)
LOC111194802 NA non-coding downstream 1015899 28643321 ~ 28652309 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 483595 27109671 ~ 27119264 (+)
G160919 ptx3 other upstream 695232 26905244 ~ 26907627 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other upstream 847546 26617262 ~ 26755313 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other upstream 1257177 26323820 ~ 26345682 (+)
G160306 NA other upstream 3483034 24119129 ~ 24119825 (+)
c18h3orf33 NA other downstream 157474 27784896 ~ 27796504 (+)
G161292 rap2b,LOC107757383 other downstream 994706 28622128 ~ 28624785 (+)
fam219b fam219b other downstream 1118274 28745696 ~ 28759007 (+)
G161331 NA other downstream 1443398 29070820 ~ 29116795 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 2726264 30353686 ~ 30414212 (+)

Expression


Co-expression Network