G161115


Basic Information

Item Value
gene id G161115
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 27780854 ~ 27783189 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU218293
TATGCCCCCATCACTAGCATTATAAGCCTGTTGGGAACATCATGTTGTGGGTaaacggaggtgagctattcgaCAAAAGTCTATGCTCATTTTCAGGTTTTGCTAAACTACAAgcccatttcacactggagttctcctttaatgagTGAACTATTCCGAACACAGCCGATGTAAACGGTGTGCCTTGTAAGGCAAGTGTAGTAAAGGTGAAGTGTATTAATATACGACTGAAAATGCTGCCGCAAAGCTAACGCCTATTAGCATGAttcattaattcagttttaCGTTTTCTCTAATTTGTCATTAGCAATTAGTTGTCCTGCTGTTCCACTTATTTCTGTTAGaaagtatagtagtatagtatacaTTATCTAATTTCAGTTTTAGCTAATAAGGGTCTTCATGTAACGCTACTATATTGAGTcctgtgtttgtttgcagtgttagCCTTACACCATATTAGCACATATCAAAAATAACTAACCTGATCTGCtgcattttaagtgataaaccatgATAATTTGATTATTTCCCAGGCTATTCCTTTAAAGAATGTTTACATCTGCAATGTGGTCAAATATTAACACCAGCCAACattagttttatctttttattcatatttcctGCAATGAACCAAAAGGGAAATTGTTCAACAGGTCACTCTGAATCAAATTTAGTCTAATCTCAATAGATTCTGTTTCATTCTGTTGTAAGGAATAAAGCATTCCTTCATGTCTGAATGCTAAGAATGCCTGTTTTTGGTTAGCATTTACTAGCTACTGGTCTCTCCACagttttagctagctaagctaggtcGCTTAAAGTAACAGAGATAATGTATAAGCAGCTTAatgctaaataaaacatataaaccaTTTCAAAATATGTAGCTATGGTAGCTAGTTAGTGTTTGTGAGTTAGGCAGGCTATCACAAATATCACAGCTTTGAGGAGTTCAACTTGAGGAAtaagctgactgaaaaaaatcctAATGATTAGCAAAGCTGTTAACTGCTAACGACTATTAGCATGATGCGTTGATTAGGGATTCACTGAATATAccaaaaaatattcagccaaaaatggcTTTTAGGGTTTGTCCAAATAAGAAATAGTGAAAAATGTTGTTATAGTAATTAAAACAGGGAGAAAAAGTtcagtatttgttttttggCCCAGTGTctcattttgtttagtttggattatagaaacattttaatttaatttcagtgcATCACTAGCGTTAATGCAAAGTGATCTCCCATTCGTTATTAGTGACTGTATGGAGGATTGTTTGGTTGCCCTGAGACTTAAGAGGGTTTTTAAAGTCGAGATTACGTAGGTTACGTATGGTCTGGCTATGCATGAAAAATGCCTTATTCCATGCCTTTTTACacattatatttatgtatttgaatGTGTGACTGAATTTACCTTACCAGCTAATTACAATGTGTTTAGTGAAGAAAGTGTACAGTAACTGTGTTTGACAATTTTTACCAAAATAAGATGTTTTTTGGgtaattttctttaatttaaacattcGGTAATGGAAGTATTTTCATAATGGCAACTTTAACTTGGCTGATGTCATAAGCTGCAttccaaagcctaggctgcagTCGAGGTATGGCgagtttttggtcaaatttcCCTTTGAAGACTCTCTCACTAGCCTGTTAATCACACATATGGAATATATTGGTCTAACAAGGCTGTGGGGTGACGCCACCAGCAAACATTTGTGTTATGGTGACATTGTCTtgtaaaaatcatgttttttttatttttattttattacaaaaaaaaaaaaaaatcattataaatatgaaaactaacattttaaaattaactttGCCCCAGAGGCTTTGTTTTTTGCTGAATTTTGGCCATTTTTCTGTGGGGTGACTGAAGAtcaggaaggatacatcagttgtgtCCTCAGAATGCCAACTGCAGTCCATCTTGGCTGCAGCCTATAGGCCTTGTAATGCAGCAATAATAGCAAGTCACCAGcactttgggaaaaaaaaaaaggatgcacAGGGTAACGGTATCTCACTAAAAGAAGTACAGTTTAAAAGAGTCCAAACAACTGTTAGATTCATAGCTATTTCgtcatttataataaatatgctttttttgtcACATGCACCTGAAAATCAATGTTCATGGTTGTGAGTAAACAGTTTTTAAGGGGCAGGCCGCAGCTACTTGACAAgttgaaaatatgttttaaatgttctgaGGAACATTTTAGCTGCTTTCccaaagtgtaacatttatgaAAATCAAGAGCATAAATTGTATGAAATTAAAAGAACATTGTGCAACAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218293 True 2336 lncRNA 0.35 1 27780854 27783189

Neighbor

gene id symbol gene type direction distance location
slc33a1 slc33a1,LOC107711775,LOC107675614,LOC107748080 coding upstream 2388 27762391 ~ 27778466 (+)
ssr3 ssr3,LOC107571207,LOC106581450 coding upstream 351073 27423510 ~ 27429781 (+)
LOC111194784 LOC107688027,LOC107751101,LOC107570926,LOC107731862,LOC106579815,LOC106606817 coding upstream 576944 27202494 ~ 27203910 (+)
LOC103022175 LOC103022175,LOC108437972 coding upstream 677260 27088875 ~ 27103594 (+)
veph1 veph1,LOC106613251 coding upstream 728655 26853880 ~ 27052199 (+)
plch1 plch1 coding downstream 21874 27805063 ~ 27965690 (+)
LOC103040346 LOC108437990,LOC108263991,LOC108264138,LOC108264137 coding downstream 185869 27969058 ~ 27977682 (+)
LOC103045576 LOC108437981,LOC108264123 coding downstream 288302 28071491 ~ 28077732 (+)
LOC107196882 LOC108434085,LOC108264118,LOC108434032 coding downstream 390421 28173610 ~ 28177986 (+)
LOC103044051 LOC108434085,LOC108264118,LOC108434032 coding downstream 397493 28180682 ~ 28184907 (+)
G161080 NA non-coding upstream 153432 27602859 ~ 27627422 (+)
G161079 NA non-coding upstream 194084 27586529 ~ 27586770 (+)
G161060 NA non-coding upstream 379667 27400961 ~ 27401187 (+)
G161017 NA non-coding upstream 441680 27338127 ~ 27339174 (+)
LOC111194785 NA non-coding upstream 544041 27235857 ~ 27236813 (+)
G161129 NA non-coding downstream 109898 27893087 ~ 27893477 (+)
LOC111194734 NA non-coding downstream 247424 28030613 ~ 28035195 (+)
G161243 NA non-coding downstream 582979 28366168 ~ 28394028 (+)
LOC111194802 NA non-coding downstream 860132 28643321 ~ 28652309 (+)
LOC111194803 NA non-coding downstream 869363 28652552 ~ 29213664 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 661590 27109671 ~ 27119264 (+)
G160919 ptx3 other upstream 873227 26905244 ~ 26907627 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other upstream 1025541 26617262 ~ 26755313 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other upstream 1435172 26323820 ~ 26345682 (+)
G160306 NA other upstream 3661029 24119129 ~ 24119825 (+)
c18h3orf33 NA other downstream 1707 27784896 ~ 27796504 (+)
G161292 rap2b,LOC107757383 other downstream 838939 28622128 ~ 28624785 (+)
fam219b fam219b other downstream 962507 28745696 ~ 28759007 (+)
G161331 NA other downstream 1287631 29070820 ~ 29116795 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 2570497 30353686 ~ 30414212 (+)

Expression


Co-expression Network