LOC111194734


Basic Information

Item Value
gene id LOC111194734
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 28030613 ~ 28035195 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU218351
GagtgtaagtctgtgctgcagTAGAAGAGTGTAATTTTAGAAAAGTTGCTGTATTTGTCTCACTGTCTTAGATAGTATAGACTTTAAACATGTTACTAAAAATTAACACTGGACCGTGTTTTTAAATACTTGCCATTCTGGATGTCCTGaacattttcatgcatattttttatgtcggttagttttatttatataaagtaaGACCTGTAGATCTACTTTATTGGATAAATTGATACAGCTAACATgaactgttttgtttctgttctgTAAAATCAGGCCCAGTTCCAAAAGACACAACATCCTCAGTGTCCTGGAGCTCCAGCTGAAGCACTGGCCACCTTCTCCATCCCCACCCAAAAGAGGTACTTCTAAGGCAGCTAGTTGAAGGCGTGATTGAGGTCCATGCCAGAGGGGTTCTGCACTGTGACCTCAAGCCATAGAACATCCTGGTTCAGATGTACAGTTAGGAACCACGCCTTCATCTTCTGTTCTTCTGGACCTTCCTCATGAGTGGTTTACCCATGAGGCCAAATCCTCCACAGTGTTGCAGATAGGAATCAtcctgctgtgtgtgagaggtgacCCTTCAACACCAGCACGGAGATCACCTCAAAGAAGTCTCAGATCATCTCTCCACCATCTGCTCTATGACCCCTGGCTAAGTATACACCACGACACAGCCACCACATCAGGCACACCTCAGTCagatttttacatttttaatttgtgtattgacccaaggagtatgggttcctctcaaggtttctatctctctttctgagagAATTTTCTTTGCCGCTGTCTCCTTTGTGCTTACTCAAAAGAGgtttggacactttttttttttttttttttttttttaactgttcttaattttgtttgtttcttaactttgtcaataaatgtttttt
>TU218353
tgattttatcctgactctggaaatttgtctgcaacTGTGAAATAATTGGAAAATCGTTAGGTACCTGAACACTCTTCTCTCTTCACCCTTAATGTAGCAGCTACCCACTGAATAACTGTTTGCCTGTTCTATAGCGGCTGTAATTtccttctgtctgtttcttaCACTCTGTAggtacttatatatttttttaattgaacgTGGCAGCGTGCCGACAATCACAAGTTTTGCAAATGTTGGGATAAATTTCAGCCAATTTAACTTTACTAGAATGTGCTCTGTGTACTCTGCAGGTACTTCTAAGGCAGCTAGTTGAAGGCGTGATTGAGGTCCATGCCAGAGGGGTTCTGCACTGTGACCTCAAGCCATAGAACATCCTGGTTCAGATGTACAGTTAGGAACCACGCCTTCATCTTCTGTTCTTCTGGACCTTCCTCATGAGTGGTTTACCCATGAGGCCAAATCCTCCACAGTGTTGCAGATAGGAATCAtcctgctgtgtgtgagaggtgacCCTTCAACACCAGCACGGAGATCACCTCAAAGAAGTCTCAGATCATCTCTCCACCATCTGCTCTATGACCCCTGGCTAAGTATACACCACGACACAGCCACCACATCAGGCACACCTCAGTCaggtaccatataaaacaataataataa
>XR_002651201.1
aactgttttgtttctgttctgTAAAATCAGGCCCAGTTCCAAAAGACACAACATCCTCAGTGTCCTGGAGCTCCAGCTGAAGCACTGGCCACCTTCTCCATCCCCACCCAAAAGAGGTACTTCTAAGGCAGCTAGTTGAAGGCGTGATTGAGGTCCATGCCAGAGGGGTTCTGCACTGTGACCTCAAGCCATAGAACATCCTGGTTCAGATGTACAGTTAGGAACCACGCCTTCATCTTCTGTTCTTCTGGACCTTCCTCATGAGTGGTTTACCCATGAGGCCAAATCCTCCACAGTGTTGCAGATAGGAATCAtcctgctgtgtgtgagaggtgacCCTTCAACACCAGCACGGAGATCACCTCAAAGAAGTCTCAGATCATCTCTCCACCATCTGCTCTATGACCCCTGGCTAAGTATACACCACGACACAGCCACCACATCAGGCACACCTCAGTCaggtaccatataaaacaataataataataattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218351 True 911 lncRNA 0.40 4 28030613 28035195
TU218353 False 663 lncRNA 0.44 2 28031398 28032184
XR_002651201.1 False 492 lncRNA 0.48 3 28030859 28032190

Neighbor

gene id symbol gene type direction distance location
LOC103040346 LOC108437990,LOC108263991,LOC108264138,LOC108264137 coding upstream 52931 27969058 ~ 27977682 (+)
plch1 plch1 coding upstream 64923 27805063 ~ 27965690 (+)
slc33a1 slc33a1,LOC107711775,LOC107675614,LOC107748080 coding upstream 252147 27762391 ~ 27778466 (+)
ssr3 ssr3,LOC107571207,LOC106581450 coding upstream 600832 27423510 ~ 27429781 (+)
LOC111194784 LOC107688027,LOC107751101,LOC107570926,LOC107731862,LOC106579815,LOC106606817 coding upstream 826703 27202494 ~ 27203910 (+)
LOC103045576 LOC108437981,LOC108264123 coding downstream 36296 28071491 ~ 28077732 (+)
LOC107196882 LOC108434085,LOC108264118,LOC108434032 coding downstream 138415 28173610 ~ 28177986 (+)
LOC103044051 LOC108434085,LOC108264118,LOC108434032 coding downstream 145487 28180682 ~ 28184907 (+)
LOC111194790 LOC108434085,LOC108264118,LOC108434032 coding downstream 150555 28185750 ~ 28195714 (+)
gpr149 gpr149 coding downstream 220777 28255972 ~ 28283318 (+)
G161129 NA non-coding upstream 137136 27893087 ~ 27893477 (+)
G161115 NA non-coding upstream 247424 27780854 ~ 27783189 (+)
G161080 NA non-coding upstream 403191 27602859 ~ 27627422 (+)
G161079 NA non-coding upstream 443843 27586529 ~ 27586770 (+)
G161060 NA non-coding upstream 629426 27400961 ~ 27401187 (+)
G161243 NA non-coding downstream 330973 28366168 ~ 28394028 (+)
LOC111194802 NA non-coding downstream 608126 28643321 ~ 28652309 (+)
LOC111194803 NA non-coding downstream 617357 28652552 ~ 29213664 (+)
G161302 NA non-coding downstream 632978 28668173 ~ 28764043 (+)
G161314 NA non-coding downstream 851247 28886442 ~ 28886800 (+)
c18h3orf33 NA other upstream 234109 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 911349 27109671 ~ 27119264 (+)
G160919 ptx3 other upstream 1122986 26905244 ~ 26907627 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other upstream 1275300 26617262 ~ 26755313 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other upstream 1684931 26323820 ~ 26345682 (+)
G161292 rap2b,LOC107757383 other downstream 586933 28622128 ~ 28624785 (+)
fam219b fam219b other downstream 710501 28745696 ~ 28759007 (+)
G161331 NA other downstream 1035625 29070820 ~ 29116795 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 2318491 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 2819363 30854558 ~ 30894506 (+)

Expression


Co-expression Network