G161275


Basic Information

Item Value
gene id G161275
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 28388563 ~ 28390456 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU218528
AACGTCGTTAATGTCCAATTGTTGCTCTTTAAGAATGATGAGGAGCCAAACTGAacatcctgtcatcatttttaagatactaagACGAAATTCGGCACGCTTAGAATTCATTACGTACTTTCAGAAAATatgctatattttatatatacaaatttTCCCCATTGGAATGCATTAGATCCCTCAACCCAGCTGAATCCACGCACAGAACCCTTtcccacctagcaaccacttagcaacaccatagctccaccacggataccataccaacaccttagcaaccaccacagacaccaaaCCAACACTttaggaaccacctagcaacacttcagcaaccaccacagacaccataccaacaccttaggaaccaccacagacaccataccGACACTttaggaaccaccacagacaccataccaataccttagcaaccaccacagacaccaaaCCATTAGcttaggaaccacctagcaacactttagtaaccaccacagacaccataccaacaccttaggaaccaccacagacaccataactacaccttaggaaccacctagcaacaccttggccatcaccacagacaccataccAACACAGTAGGAACTACCTAACAACGccgtagcaaccaccacggataccgtAAGAACATcttaggaaccacctagcaacaccttaccaaccaccacTGACGCCATACCAACACcttaggaaccacctagcagcacctttacaaccaccacagacaccacaccaacaccttagcaactaccacagacaccatagcaaccacctagtttTGGAGCAAAGGTTTTGGCgctgcaatcacactcgcagtttctgcaggaactgaaATCTGGTTAGTTGAGACATCCTATTGCAAATATTGTTCATTAATCCACCCTTACTGTGATGTGTTGccatatatttttaacactgttttcagtgttttgtgtggACGTGGAAAAACAGGATGAAGCTATATGAAAAAAGCTGATGTCATAACGAGAGCATGTTTCTTTCTAAATCTAAAAACACCTCCTTACTCCCTATATAGTGAACTACTTACTTCATTCAACTGCAGCGTCTACACAGATTCTACTCACTACAGTTCAGATTTTAATGTatgagtaaatgtaaatactgcactataacaaatatataatgttcATATACTGTGTAATGCTCTGCTTAGatttggaatatatatatatatatatatatagctagcatgcaaaaatagttttgttttgtctgtgtgtggacTGAAACACTTTAAATATCTGAATTCATGTGGACAGGGCCTGGATTAAATCTATATACATGCCAAGtttaaaatgaaggaaaatgtaaaactgctccttcttttttttattcatattctcGTTTTTATTTGGGTCTCAGGGAGAACGCTCATGTATCTACAGTGTGAATGATTGTAAATCTATTGTAAATATGTTTCTAATAACTTCaccattggaaaaaaaactaatatgcATACTATAGATTTATATTCCATaaaagttttattgttttaacctTGTGTGCTTGTTTTTATTGCCTGTCTGTGTCCAAAATGGATTTGGGT
>TU218529
AACGTCGTTAATGTCCAATTGTTGCTCTTTAAGAATGATGAGGAGCCAAACTGAacatcctgtcatcatttttaagatactaagACGAAATTCGGCACGCTTAGAATTCATTACGTACTTTCAGAAAATatgctatattttatatatacaaatttTCCCCATTGGAATGCATTAGATCCCTCAACCCAGCTGAATCCACGCACAGAACCCTTtcccacctagcaaccacttagcaacaccatagctccaccacggataccataccaacaccttagcaaccaccacagacaccaaaCCAACACTttaggaaccacctagcaacacttcagcaaccaccacagacaccataccaacaccttagcaaccaccacagacaccataccaataccttagcaaccaccacagacaccaaaCCATTAGcttaggaaccacctagcaacactttagtaaccaccacagacaccataccaacaccttaggaaccaccacagacaccataactacaccttaggaaccacctagcaacaccttggccatcaccacagacaccataccAACACAGTAGGAACTACCTAACAACGccgtagcaaccaccacggataccgtAAGAACATcttaggaaccacctagcaacaccttaccaaccaccacTGACGCCATACCAACACcttaggaaccacctagcagcacctttacaaccaccacagacaccacaccaacaccttagcaactaccacagacaccatagcaaccacctagtttTGGAGCAAAGGTTTTGGCgctgcaatcacactcgcagtttctgcaggaactgaaATCTGGTTAGTTGAGACATCCTATTGCAAATATTGTTCATTAATCCACCCTTACTGTGATGTGTTGccatatatttttaacactgttttcagtgttttgtgtggACGTGGAAAAACAGGATGAAGCTATATGAAAAAAGCTGATGTCATAACGAGAGCATGTTTCTTTCTAAATCTAAAAACACCTCCTTACTCCCTATATAGTGAACTACTTACTTCATTCAACTGCAGCGTCTACACAGATTCTACTCACTACAGTTCAGATTTTAATGTatgagtaaatgtaaatactgcactataacaaatatataatgttcATATACTGTGTAATGCTCTGCTTAGatttggaatatatatatatatatatatatagctagcatgcaaaaatagttttgttttgtctgtgtgtggacTGAAACACTTTAAATATCTGAATTCATGTGGACAGGGCCTGGATTAAATCTATATACATGCCAAGtttaaaatgaaggaaaatgtaaaactgctccttcttttttttattcatattctcGTTTTTATTTGGGTCTCAGGGAGAACGCTCATGTATCTACAGTGTGAATGATTGTAAATCTATTGTAAATATGTTTCTAATAACTTCaccattggaaaaaaaactaatatgcA
>TU218530
AACGTCGTTAATGTCCAATTGTTGCTCTTTAAGAATGATGAGGAGCCAAACTGAacatcctgtcatcatttttaagatactaagACGAAATTCGGCACGCTTAGAATTCATTACGTACTTTCAGAAAATatgctatattttatatatacaaatttTCCCCATTGGAATGCATTAGATCCCTCAACCCAGCTGAATCCACGCACAGAACCCTTtcccacctagcaaccacttagcaacaccatagctccaccacggataccataccaacaccttagcaaccaccacagacaccaaaCCAACACTttaggaaccacctagcaacacttcagcaaccaccacagacaccataccaacaccttagcaaccaccacagacaccataccaataccttagcaaccaccacagacaccaaaCCATTAGcttaggaaccacctagcaacactttagtaaccaccacagacaccataccaacaccttaggaaccaccacagacaccataactacaccttaggaaccacctagcaacaccttggccatcaccacagacaccataccAACACAGTAGGAACTACCTAACAACGccgtagcaaccaccacggataccgtAAGAACATcttaggaaccacctagcaacaccttaccaaccaccacTGACGCCATACCAACACcttaggaaccacctagcagcacctttacaaccaccacagacaccacaccaacaccttagcaactaccacagacaccatagcaaccacctagtttTGGAGCAAAGGTTTTGGCgctgcaatcacactcgcagtttctgcaggaactgaaATCTGGTTAGTTGAGACATCCTATTGCAAATATTGTTCATTAATCCACCCTTACTGTGATGTGTTGccatatatttttaacactgttttcagtgttttgtgtggACGTGGAAAAACAGGATGAAGCTATATGAAAAAAGCTGATGTCATAACGAGAGCATGTTTCTTTCTAAATCTAAAAACACCTCCTTACTCCCTATATAGTGAACTACTTACTTCATTCAACTGCAGCGTCTACACAGATTCTACTCACTACAGTTCAGATTTTAATGTatgagtaaatgtaaatactgcactataacaaatatataatgttcATATACTGTGTAATGCTCTGCTTAGatttggaatatatatatatatatatatatagctagcatgcaaaaatagttttgttttgtctgtgtgtggacTGAAACACTTTAAATATCTGAATTCATGTGGACAGGGCCTGGATTAAATCTATATACATGCCAAGtttaaaatgaaggaaaatgtaaaactgctccttcttttttttattcatattctcGTTTTTATTTGGGTCTCAGGGAGAACGCTCATGTATCTACAGTGTGAATGATTGTAAATCTATTGTAAATATGTTTCTAATAACTTCaccattggaaaaaaaactaatatgcA
>TU218531
AACGTCGTTAATGTCCAATTGTTGCTCTTTAAGAATGATGAGGAGCCAAACTGAacatcctgtcatcatttttaagatactaagACGAAATTCGGCACGCTTAGAATTCATTACGTACTTTCAGAAAATatgctatattttatatatacaaatttTCCCCATTGGAATGCATTAGATCCCTCAACCCAGCTGAATCCACGCACAGAACCCTTtcccacctagcaaccacttagcaacaccatagctccaccacggataccataccaacaccttagcaaccaccacagacaccaaaCCAACACTttaggaaccacctagcaacacttcagcaaccaccacagacaccataccaacaccttaggaaccaccacagacaccataccGACACTttaggaaccacctagcaacacttcagcaaccaccacagacaccataccaacaccttagcaaccaccacagacaccataccaataccttagcaaccaccacagacaccaaaCCATTAGcttaggaaccacctagcaacactttagtaaccaccacagacaccataccaacaccttaggaaccaccacagacaccataactacaccttaggaaccacctagcaacaccttggccatcaccacagacaccataccAACACAGTAGGAACTACCTAACAACGccgtagcaaccaccacggataccgtAAGAACATcttaggaaccacctagcaacaccttaccaaccaccacTGACGCCATACCAACACcttaggaaccacctagcagcacctttacaaccaccacagacaccacaccaacaccttagcaactaccacagacaccatagcaaccacctagtttTGGAGCAAAGGTTTTGGCgctgcaatcacactcgcagtttctgcaggaactgaaATCTGGTTAGTTGAGACATCCTATTGCAAATATTGTTCATTAATCCACCCTTACTGTGATGTGTTGccatatatttttaacactgttttcagtgttttgtgtggACGTGGAAAAACAGGATGAAGCTATATGAAAAAAGCTGATGTCATAACGAGAGCATGTTTCTTTCTAAATCTAAAAACACCTCCTTACTCCCTATATAGTGAACTACTTACTTCATTCAACTGCAGCGTCTACACAGATTCTACTCACTACAGTTCAGATTTTAATGTatgagtaaatgtaaatactgcactataacaaatatataatgttcATATACTGTGTAATGCTCTGCTTAGatttggaatatatatatatatatatatatagctagcatgcaaaaatagttttgttttgtctgtgtgtggacTGAAACACTTTAAATATCTGAATTCATGTGGACAGGGCCTGGATTAAATCTATATACATGCCAAGtttaaaatgaaggaaaatgtaaaactgctccttcttttttttattcatattctcGTTTTTATTTGGGTCTCAGGGAGAACGCTCATGTATCTACAGTGTGAATGATTGTAAATCTATTGTAAATATGTTTCTAATAACTTCaccattggaaaaaaaactaatatgcA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218528 True 1582 lncRNA 0.39 2 28388563 28390456
TU218529 False 1460 lncRNA 0.40 2 28388653 28390456
TU218530 False 1460 lncRNA 0.40 3 28388653 28390456
TU218531 False 1546 lncRNA 0.40 2 28388653 28390456

Neighbor

gene id symbol gene type direction distance location
LOC103043986 LOC103027426 coding downstream 95427 28292230 ~ 28293136 (-)
LOC111194798 LOC108434033,LOC108264121,LOC108264117,LOC108264120,LOC107564266,LOC107695204,LOC107742945 coding downstream 187425 28199233 ~ 28201138 (-)
LOC103044334 LOC108264119,LOC107671059,LOC107707879,LOC107557164 coding downstream 215933 28167233 ~ 28172630 (-)
LOC103044641 v2rx3,LOC108434083,LOC108263925,LOC107730035,LOC107695206 coding downstream 221797 28161261 ~ 28166766 (-)
LOC111194794 LOC108434083,LOC108263925 coding downstream 233499 28150753 ~ 28155064 (-)
arhgef26 arhgef26,LOC106581462 coding upstream 2825 28393281 ~ 28482220 (-)
rap2b rap2b,LOC107757383 coding upstream 231627 28622083 ~ 28624780 (-)
p2ry1 p2ry1 coding upstream 313423 28703879 ~ 28707145 (-)
ulk3 ulk3,LOC107665498,LOC107681021 coding upstream 1020707 29411163 ~ 29446961 (-)
larp6 larp6,LOC103354325 coding upstream 1111659 29502115 ~ 29514077 (-)
G161273 NA non-coding downstream 1897 28385647 ~ 28386666 (-)
LOC111194799 LOC108264117,LOC108434033,LOC108264121,LOC108264120 non-coding downstream 185708 28202320 ~ 28202855 (-)
LOC111194796 NA non-coding downstream 197537 28181615 ~ 28191026 (-)
LOC111194797 NA non-coding downstream 198861 28187996 ~ 28189702 (-)
G161147 NA non-coding downstream 608776 27778724 ~ 27779787 (-)
G161334 NA non-coding upstream 201709 28592165 ~ 28592552 (-)
G161363 NA non-coding upstream 336727 28727183 ~ 28727618 (-)
G161367 NA non-coding upstream 355243 28745699 ~ 28749048 (-)
G161377 NA non-coding upstream 432261 28822717 ~ 28862392 (-)
G161400 NA non-coding upstream 673371 29063827 ~ 29064178 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other downstream 809645 27429941 ~ 27578918 (-)
G160979 ccnl1,ccnl1a,LOC107710830,LOC107684610,LOC107714439,LOC107691967,LOC107563513 other downstream 1269310 27109707 ~ 27119253 (-)
LOC103037634 NA other downstream 2042854 26342351 ~ 26345709 (-)
G160715 NA other downstream 2649201 25738881 ~ 25739362 (-)
LOC103041696 NA other downstream 2785851 25600660 ~ 25602712 (-)
LOC111194804 NA other upstream 203044 28593500 ~ 28652947 (-)
LOC103037190 NA other upstream 496455 28886911 ~ 28941387 (-)
G161711 NA other upstream 1925150 30315606 ~ 30325858 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other upstream 2308714 30699170 ~ 30781708 (-)
tap1 NA other upstream 4261512 32651968 ~ 32675269 (-)

Expression


Co-expression Network